COG0684


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0684, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 9 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description RNA degradosome component RraA (regulator of RNase E activity)
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0684 is associated with 9 different proteins (see tab "Protein list" and "Profile")
The 9 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1761 FBDBKF_12260 112805 113338 1 rraA ribonuclease E activity regulator RraA Morganella morganii S1
1 group_1761 EHELCC_14045 21367 21900 -1 rraA ribonuclease E activity regulator RraA Morganella morganii S2
2 group_1761 NLDBIP_15140 25304 25837 -1 rraA ribonuclease E activity regulator RraA Morganella morganii S4
3 group_1761 LHKJJB_15470 112805 113338 1 rraA ribonuclease E activity regulator RraA Morganella morganii S3
4 group_1761 HKOGLL_14590 99468 100001 1 rraA ribonuclease E activity regulator RraA Morganella morganii S5
5 group_3822 F4V73_RS02700 569324 570019 1 RraA family protein Morganella psychrotolerans
6 group_1761 F4V73_RS17090 46792 47340 1 rraA ribonuclease E activity regulator RraA Morganella psychrotolerans
7 group_3822 PMI_RS11695 2584983 2585681 1 RraA family protein Proteus mirabilis HI4320
8 group_1761 PMI_RS15890 3527406 3527924 -1 rraA ribonuclease E activity regulator RraA Proteus mirabilis HI4320