Homologs in group_3822

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1 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS02700 F4V73_RS02700 60.2 Morganella psychrotolerans - RraA family protein

Distribution of the homologs in the orthogroup group_3822

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3822

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q58060 1.68e-10 62 28 3 150 4 MJ0644 Uncharacterized protein MJ0644 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q46DA4 3.58e-07 53 25 1 124 3 hpsA 3-hexulose-6-phosphate synthase Methanosarcina barkeri (strain Fusaro / DSM 804)
G2IQQ8 7.52e-06 48 27 2 114 1 ligK 4-carboxy-4-hydroxy-2-oxoadipate aldolase Sphingobium sp. (strain NBRC 103272 / SYK-6)
Q48806 1.32e-05 49 23 2 172 3 dlpA Protein DlpA Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)
Q5SIP7 0.000224 43 22 4 156 1 TTHA1322 4-hydroxy-4-methyl-2-oxoglutarate aldolase Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Q72J23 0.000399 43 21 4 156 3 TT_C0958 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS11695
Feature type CDS
Gene -
Product RraA family protein
Location 2584983 - 2585681 (strand: 1)
Length 699 (nucleotides) / 232 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_3822
Orthogroup size 2
N. genomes 2

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Genomic region

Domains

PF03737 Aldolase/RraA

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0684 Translation, ribosomal structure and biogenesis (J) J RNA degradosome component RraA (regulator of RNase E activity)

Protein Sequence

MLQKISANKIALIKRMQLSTPTLVDILDSLGKTIVLNSQLKSINLENFYSVGQAYTVQWKLIRKQKSILNKQPSTWEQVSSFLVPEITDAKGLFYIAGGHELITEAALAGGMSCTYFEKLGFEGVILGGAVRDKKDLTNLTIPVIATNLTPTDTQGAYFVSETGTQCTIEHATICSGDLVISDPNGTVIIPFSLVDNVLEEAIKIDSIENNMLEKIKHGQRLPELINITGRI

Flanking regions ( +/- flanking 50bp)

ATAACCATAAAAAAATAATCATTTAACTCTGTGAAACATTGGAGTTCACCATGCTACAAAAAATATCTGCCAATAAAATTGCATTAATAAAAAGAATGCAACTTAGTACTCCTACATTAGTCGATATTCTCGATAGTTTAGGAAAAACCATTGTATTAAATAGTCAATTAAAAAGTATTAACCTAGAAAACTTTTATTCTGTTGGACAAGCTTATACTGTGCAATGGAAATTAATTAGAAAACAAAAATCTATTTTAAATAAACAACCTTCTACGTGGGAACAAGTTAGTTCTTTTTTAGTCCCTGAAATAACAGATGCAAAAGGATTATTCTATATAGCCGGAGGACATGAACTAATAACAGAAGCAGCACTTGCAGGTGGCATGAGTTGTACTTATTTTGAAAAATTAGGCTTTGAAGGAGTTATTTTAGGGGGAGCGGTACGAGACAAGAAAGATCTCACCAATCTAACCATTCCAGTCATTGCCACCAATCTTACTCCTACAGATACACAAGGCGCTTATTTTGTCAGTGAGACTGGCACTCAATGCACCATTGAGCATGCCACAATCTGTAGTGGTGATTTAGTGATATCCGACCCTAATGGCACCGTGATTATCCCTTTTTCACTCGTCGATAATGTTCTAGAAGAAGCGATTAAGATAGATAGCATTGAAAATAACATGCTAGAAAAAATCAAACATGGACAACGTTTACCAGAACTTATCAATATAACGGGACGTATATAATAAATAAAGGTGACTGACCATGATAAATATTCATACATTGGGTCCTGCAG