COG0513

Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected COG entry COG0513
Protein list: lists the 35 occurences of the COG entry within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the COG entry of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entry has been clustered.
Orthogroups are shown in red if they are annotated with that particular COG entry in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and COG entry prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entry.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entry prediction.

Description

Description Superfamily II DNA and RNA helicase
Function(s) descr. Replication, recombination and repair (L)

Occurence in the database

COG0513 is associated with 35 different proteins
The 35 proteins are classified into 5 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_641 FBDBKF_01470 292494 293840 1 srmB ATP-dependent RNA helicase SrmB Morganella morganii S1
1 group_1025 FBDBKF_05235 53190 54563 1 dbpA ATP-dependent RNA helicase DbpA Morganella morganii S1
2 group_1382 FBDBKF_08205 18067 19362 -1 rhlB ATP-dependent RNA helicase RhlB Morganella morganii S1
3 group_1466 FBDBKF_08710 122544 124451 1 srmB DEAD/DEAH family ATP-dependent RNA helicase Morganella morganii S1
4 group_1525 FBDBKF_09535 4801 6147 -1 rhlE ATP-dependent RNA helicase RhlE Morganella morganii S1
5 group_641 EHELCC_00075 15028 16374 -1 srmB ATP-dependent RNA helicase SrmB Morganella morganii S2
6 group_1525 EHELCC_04335 196766 198112 -1 rhlE ATP-dependent RNA helicase RhlE Morganella morganii S2
7 group_1025 EHELCC_12355 126931 128304 -1 dbpA ATP-dependent RNA helicase DbpA Morganella morganii S2
8 group_1466 EHELCC_12815 39274 41181 -1 srmB DEAD/DEAH family ATP-dependent RNA helicase Morganella morganii S2
9 group_1382 EHELCC_13320 144363 145658 1 rhlB ATP-dependent RNA helicase RhlB Morganella morganii S2
10 group_641 NLDBIP_03385 663762 665108 1 srmB ATP-dependent RNA helicase SrmB Morganella morganii S4
11 group_1525 NLDBIP_04335 196562 197908 -1 rhlE ATP-dependent RNA helicase RhlE Morganella morganii S4
12 group_1025 NLDBIP_12695 126886 128259 -1 dbpA ATP-dependent RNA helicase DbpA Morganella morganii S4
13 group_1466 NLDBIP_13155 39274 41181 -1 srmB DEAD/DEAH family ATP-dependent RNA helicase Morganella morganii S4
14 group_1382 NLDBIP_13660 144363 145658 1 rhlB ATP-dependent RNA helicase RhlB Morganella morganii S4
15 group_641 LHKJJB_04900 271003 272349 1 srmB ATP-dependent RNA helicase SrmB Morganella morganii S3
16 group_1025 LHKJJB_12555 126931 128304 -1 dbpA ATP-dependent RNA helicase DbpA Morganella morganii S3
17 group_1382 LHKJJB_12895 16785 18080 -1 rhlB ATP-dependent RNA helicase RhlB Morganella morganii S3
18 group_1466 LHKJJB_13400 121262 123169 1 srmB DEAD/DEAH family ATP-dependent RNA helicase Morganella morganii S3
19 group_1525 LHKJJB_14295 137470 138816 1 rhlE ATP-dependent RNA helicase RhlE Morganella morganii S3
20 group_641 HKOGLL_02145 15233 16579 -1 srmB ATP-dependent RNA helicase SrmB Morganella morganii S5
21 group_1025 HKOGLL_11170 126931 128304 -1 dbpA ATP-dependent RNA helicase DbpA Morganella morganii S5
22 group_1466 HKOGLL_11630 39274 41181 -1 srmB DEAD/DEAH family ATP-dependent RNA helicase Morganella morganii S5
23 group_1382 HKOGLL_12135 144363 145658 1 rhlB ATP-dependent RNA helicase RhlB Morganella morganii S5
24 group_1525 HKOGLL_12240 5582 6928 -1 rhlE ATP-dependent RNA helicase RhlE Morganella morganii S5
25 group_1525 F4V73_RS00830 171998 173353 1 rhlE ATP-dependent RNA helicase RhlE Morganella psychrotolerans
26 group_641 F4V73_RS01935 422802 424154 -1 srmB ATP-dependent RNA helicase SrmB Morganella psychrotolerans
27 group_1025 F4V73_RS05690 1209555 1210928 1 dbpA ATP-dependent RNA helicase DbpA Morganella psychrotolerans
28 group_1466 F4V73_RS09925 89727 91724 1 DEAD/DEAH family ATP-dependent RNA helicase Morganella psychrotolerans
29 group_1382 F4V73_RS18755 19221 20516 -1 rhlB ATP-dependent RNA helicase RhlB Morganella psychrotolerans
30 group_1025 PMI_RS00530 136845 138218 1 dbpA ATP-dependent RNA helicase DbpA Proteus mirabilis HI4320
31 group_1525 PMI_RS03055 673134 674531 1 rhlE ATP-dependent RNA helicase RhlE Proteus mirabilis HI4320
32 group_641 PMI_RS09360 2042522 2043877 1 srmB ATP-dependent RNA helicase SrmB Proteus mirabilis HI4320
33 group_1382 PMI_RS16465 3631136 3632434 -1 rhlB ATP-dependent RNA helicase RhlB Proteus mirabilis HI4320
34 group_1466 PMI_RS17055 3753090 3754925 1 DEAD/DEAH family ATP-dependent RNA helicase Proteus mirabilis HI4320