COG0513


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0513, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 35 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Superfamily II DNA and RNA helicase
Function(s) descr. Replication, recombination and repair (L)

Occurence in the database

COG0513 is associated with 35 different proteins (see tab "Protein list" and "Profile")
The 35 proteins are classified into 5 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_235 FBDBKF_01470 292494 293840 1 srmB ATP-dependent RNA helicase SrmB Morganella morganii S1
1 group_956 FBDBKF_05235 53190 54563 1 dbpA ATP-dependent RNA helicase DbpA Morganella morganii S1
2 group_1325 FBDBKF_08205 18067 19362 -1 rhlB ATP-dependent RNA helicase RhlB Morganella morganii S1
3 group_1410 FBDBKF_08710 122544 124451 1 srmB DEAD/DEAH family ATP-dependent RNA helicase Morganella morganii S1
4 group_1477 FBDBKF_09535 4801 6147 -1 rhlE ATP-dependent RNA helicase RhlE Morganella morganii S1
5 group_235 EHELCC_00075 15028 16374 -1 srmB ATP-dependent RNA helicase SrmB Morganella morganii S2
6 group_1477 EHELCC_04335 196766 198112 -1 rhlE ATP-dependent RNA helicase RhlE Morganella morganii S2
7 group_956 EHELCC_12355 126931 128304 -1 dbpA ATP-dependent RNA helicase DbpA Morganella morganii S2
8 group_1410 EHELCC_12815 39274 41181 -1 srmB DEAD/DEAH family ATP-dependent RNA helicase Morganella morganii S2
9 group_1325 EHELCC_13320 144363 145658 1 rhlB ATP-dependent RNA helicase RhlB Morganella morganii S2
10 group_235 NLDBIP_03385 663762 665108 1 srmB ATP-dependent RNA helicase SrmB Morganella morganii S4
11 group_1477 NLDBIP_04335 196562 197908 -1 rhlE ATP-dependent RNA helicase RhlE Morganella morganii S4
12 group_956 NLDBIP_12695 126886 128259 -1 dbpA ATP-dependent RNA helicase DbpA Morganella morganii S4
13 group_1410 NLDBIP_13155 39274 41181 -1 srmB DEAD/DEAH family ATP-dependent RNA helicase Morganella morganii S4
14 group_1325 NLDBIP_13660 144363 145658 1 rhlB ATP-dependent RNA helicase RhlB Morganella morganii S4
15 group_235 LHKJJB_04900 271003 272349 1 srmB ATP-dependent RNA helicase SrmB Morganella morganii S3
16 group_956 LHKJJB_12555 126931 128304 -1 dbpA ATP-dependent RNA helicase DbpA Morganella morganii S3
17 group_1325 LHKJJB_12895 16785 18080 -1 rhlB ATP-dependent RNA helicase RhlB Morganella morganii S3
18 group_1410 LHKJJB_13400 121262 123169 1 srmB DEAD/DEAH family ATP-dependent RNA helicase Morganella morganii S3
19 group_1477 LHKJJB_14295 137470 138816 1 rhlE ATP-dependent RNA helicase RhlE Morganella morganii S3
20 group_235 HKOGLL_02145 15233 16579 -1 srmB ATP-dependent RNA helicase SrmB Morganella morganii S5
21 group_956 HKOGLL_11170 126931 128304 -1 dbpA ATP-dependent RNA helicase DbpA Morganella morganii S5
22 group_1410 HKOGLL_11630 39274 41181 -1 srmB DEAD/DEAH family ATP-dependent RNA helicase Morganella morganii S5
23 group_1325 HKOGLL_12135 144363 145658 1 rhlB ATP-dependent RNA helicase RhlB Morganella morganii S5
24 group_1477 HKOGLL_12240 5582 6928 -1 rhlE ATP-dependent RNA helicase RhlE Morganella morganii S5
25 group_1477 F4V73_RS00830 171998 173353 1 rhlE ATP-dependent RNA helicase RhlE Morganella psychrotolerans
26 group_235 F4V73_RS01935 422802 424154 -1 srmB ATP-dependent RNA helicase SrmB Morganella psychrotolerans
27 group_956 F4V73_RS05690 1209555 1210928 1 dbpA ATP-dependent RNA helicase DbpA Morganella psychrotolerans
28 group_1410 F4V73_RS09925 89727 91724 1 DEAD/DEAH family ATP-dependent RNA helicase Morganella psychrotolerans
29 group_1325 F4V73_RS18755 19221 20516 -1 rhlB ATP-dependent RNA helicase RhlB Morganella psychrotolerans
30 group_956 PMI_RS00530 136845 138218 1 dbpA ATP-dependent RNA helicase DbpA Proteus mirabilis HI4320
31 group_1477 PMI_RS03055 673134 674531 1 rhlE ATP-dependent RNA helicase RhlE Proteus mirabilis HI4320
32 group_235 PMI_RS09360 2042522 2043877 1 srmB ATP-dependent RNA helicase SrmB Proteus mirabilis HI4320
33 group_1325 PMI_RS16465 3631136 3632434 -1 rhlB ATP-dependent RNA helicase RhlB Proteus mirabilis HI4320
34 group_1410 PMI_RS17055 3753090 3754925 1 DEAD/DEAH family ATP-dependent RNA helicase Proteus mirabilis HI4320