Help to interpret the results
The page contains two contents:
General: this table lists the KO entries and their description specific to this pathway, and provides their frequencies in and in the whole dataset.
Profile + homologs: the distribution of the Kegg entries of RNA degradation Kegg pathway is displayed here. Given a Kegg entry and a genome, a red box indicates that one or more loci have been annotated with, while a green box indicates that no locus/loci has(have) been annotated with it, but it/they is/are part of an Orthologous group in which other members have been annotated with that Kegg entry, so it is likely that this copy(ies) also performs this Kegg function.
Check the composition of the RNA degradation pathway
| KO | Description | All occurrences |
|---|---|---|
| K00850 | 6-phosphofructokinase 1 [EC:2.7.1.11] | 6 |
| K00937 | polyphosphate kinase [EC:2.7.4.1] | 7 |
| K00962 | polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] | 7 |
| K00970 | poly(A) polymerase [EC:2.7.7.19] | 7 |
| K01148 | poly(A)-specific ribonuclease [EC:3.1.13.4] | 0 |
| K01689 | enolase [EC:4.2.1.11] | 7 |
| K03514 | non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] | 0 |
| K03628 | transcription termination factor Rho | 7 |
| K03654 | ATP-dependent DNA helicase RecQ [EC:5.6.2.4] | 7 |
| K03666 | host factor-I protein | 7 |
| K03678 | exosome complex component RRP45 | 0 |
| K03679 | exosome complex component RRP4 | 0 |
| K03681 | exosome complex component RRP40 | 0 |
| K03732 | ATP-dependent RNA helicase RhlB [EC:3.6.4.13] | 7 |
| K04043 | molecular chaperone DnaK | 7 |
| K04077 | chaperonin GroEL [EC:5.6.1.7] | 7 |
| K05592 | ATP-dependent RNA helicase DeaD [EC:3.6.4.13] | 7 |
| K07573 | exosome complex component CSL4 | 0 |
| K08300 | ribonuclease E [EC:3.1.26.12] | 7 |
| K08311 | putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] | 7 |
| K10643 | CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] | 0 |
| K11600 | exosome complex component RRP41 | 0 |
| K11927 | ATP-dependent RNA helicase RhlE [EC:3.6.4.13] | 7 |
| K12571 | PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] | 0 |
| K12572 | PAB-dependent poly(A)-specific ribonuclease subunit 3 | 0 |
| K12573 | ribonuclease R [EC:3.1.13.1] | 7 |
| K12574 | ribonuclease J [EC:3.1.-.-] | 0 |
| K12580 | CCR4-NOT transcription complex subunit 3 | 0 |
| K12581 | CCR4-NOT transcription complex subunit 7/8 | 0 |
| K12584 | m7GpppX diphosphatase [EC:3.6.1.59] | 0 |
| K12585 | exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] | 0 |
| K12586 | exosome complex component RRP43 | 0 |
| K12587 | exosome complex component MTR3 | 0 |
| K12589 | exosome complex component RRP42 | 0 |
| K12590 | exosome complex component RRP46 | 0 |
| K12591 | exosome complex exonuclease RRP6 [EC:3.1.13.-] | 0 |
| K12592 | exosome complex protein LRP1 | 0 |
| K12593 | M-phase phosphoprotein 6, animal type | 0 |
| K12594 | M-phase phosphoprotein 6, fungi type | 0 |
| K12595 | superkiller protein 7 | 0 |
| K12596 | poly(A) RNA polymerase | 0 |
| K12597 | protein AIR1/2 | 0 |
| K12598 | ATP-dependent RNA helicase DOB1 [EC:3.6.4.13] | 0 |
| K12599 | antiviral helicase SKI2 [EC:3.6.4.13] | 0 |
| K12600 | superkiller protein 3 | 0 |
| K12601 | superkiller protein 8 | 0 |
| K12602 | WD repeat-containing protein 61 | 0 |
| K12603 | CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] | 0 |
| K12604 | CCR4-NOT transcription complex subunit 1 | 0 |
| K12605 | CCR4-NOT transcription complex subunit 2 | 0 |
| K12606 | CCR4-NOT transcription complex subunit 9 | 0 |
| K12607 | CCR4-NOT transcription complex subunit 10 | 0 |
| K12608 | CCR4-NOT complex subunit CAF16 | 0 |
| K12609 | CCR4-NOT transcriptional complex subunit CAF120 | 0 |
| K12610 | mRNA-decapping enzyme 1A [EC:3.-.-.-] | 0 |
| K12611 | mRNA-decapping enzyme 1B [EC:3.-.-.-] | 0 |
| K12612 | mRNA-decapping enzyme subunit 1 | 0 |
| K12613 | mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] | 0 |
| K12614 | ATP-dependent RNA helicase DDX6/DHH1 [EC:3.6.4.13] | 0 |
| K12615 | enhancer of mRNA-decapping protein 3 | 0 |
| K12616 | enhancer of mRNA-decapping protein 4 | 0 |
| K12617 | DNA topoisomerase 2-associated protein PAT1 | 0 |
| K12618 | 5'-3' exoribonuclease 1 [EC:3.1.13.-] | 0 |
| K12619 | 5'-3' exoribonuclease 2 [EC:3.1.13.-] | 0 |
| K12620 | U6 snRNA-associated Sm-like protein LSm1 | 0 |
| K12621 | U6 snRNA-associated Sm-like protein LSm2 | 0 |
| K12622 | U6 snRNA-associated Sm-like protein LSm3 | 0 |
| K12623 | U6 snRNA-associated Sm-like protein LSm4 | 0 |
| K12624 | U6 snRNA-associated Sm-like protein LSm5 | 0 |
| K12625 | U6 snRNA-associated Sm-like protein LSm6 | 0 |
| K12626 | U6 snRNA-associated Sm-like protein LSm7 | 0 |
| K12627 | U6 snRNA-associated Sm-like protein LSm8 | 0 |
| K13126 | polyadenylate-binding protein | 0 |
| K14442 | ATP-dependent RNA helicase DHX36 [EC:3.6.4.13] | 0 |
| K14443 | protein Tob/BTG | 0 |
| K16855 | U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64] | 0 |
| K18681 | DIS3-like exonuclease 1 [EC:3.1.13.-] | 0 |
| K18682 | ribonucrease Y [EC:3.1.-.-] | 0 |
| K22468 | polyphosphate kinase [EC:2.7.4.34] | 0 |