K08300


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Kegg Orthologs K08300, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Kegg Orthologs within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Kegg Ortholog(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Kegg Orthologs has been clustered.
In red the Kegg Orthologs with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Kegg Orthologs prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Kegg Orthologs.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Kegg Orthologs prediction.

Description

External link K08300
KO K08300
Description ribonuclease E [EC:3.1.26.12]

KO part of 1 pathways

RNA degradation

KO part of 0 modules

Occurence in the database

K08300 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1968 PMI_RS04180 941186 944707 -1 rne ribonuclease E Proteus mirabilis HI4320
1 group_1968 FBDBKF_14760 47868 51032 1 rne ribonuclease E Morganella morganii S1
2 group_1968 EHELCC_15565 77944 81108 1 rne ribonuclease E Morganella morganii S2
3 group_1968 NLDBIP_16095 77944 81108 1 rne ribonuclease E Morganella morganii S4
4 group_1968 LHKJJB_15745 35578 38742 -1 rne ribonuclease E Morganella morganii S3
5 group_1968 HKOGLL_14865 34790 37954 -1 rne ribonuclease E Morganella morganii S5
6 group_1968 F4V73_RS07555 1576676 1579888 1 rne ribonuclease E Morganella psychrotolerans