Biofilm formation - Escherichia coli
Help to interpret the results
The page contains two contents:
General: this table lists the KO entries and their description specific to this pathway, and provides their frequencies in Proteus mirabilis HI4320 and in the whole dataset.
Profile + homologs: the distribution of the Kegg entries of Biofilm formation - Escherichia coli Kegg pathway is displayed here. Given a Kegg entry and a genome, a red box indicates that one or more loci have been annotated with, while a green box indicates that no locus/loci has(have) been annotated with it, but it/they is/are part of an Orthologous group in which other members have been annotated with that Kegg entry, so it is likely that this copy(ies) also performs this Kegg function.
Check the composition of the Biofilm formation - Escherichia coli pathway
| KO | Description | #in this genome | All occurrences |
|---|---|---|---|
| K00688 | glycogen phosphorylase [EC:2.4.1.1] | 0 | 0 |
| K00694 | cellulose synthase (UDP-forming) [EC:2.4.1.12] | 2 | 2 |
| K00703 | starch synthase [EC:2.4.1.21] | 0 | 0 |
| K00975 | glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] | 0 | 0 |
| K01991 | polysaccharide biosynthesis/export protein | 0 | 0 |
| K02398 | negative regulator of flagellin synthesis FlgM | 1 | 7 |
| K02402 | flagellar transcriptional activator FlhC | 2 | 8 |
| K02403 | flagellar transcriptional activator FlhD | 2 | 8 |
| K02405 | RNA polymerase sigma factor FliA | 1 | 7 |
| K02425 | regulator of sigma S factor FliZ | 1 | 7 |
| K02777 | sugar PTS system EIIA component [EC:2.7.1.-] | 1 | 7 |
| K03087 | RNA polymerase nonessential primary-like sigma factor | 1 | 7 |
| K03563 | carbon storage regulator | 1 | 7 |
| K03566 | LysR family transcriptional regulator, glycine cleavage system transcriptional activator | 1 | 21 |
| K03567 | glycine cleavage system transcriptional repressor | 1 | 7 |
| K04333 | LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein | 0 | 0 |
| K04334 | major curlin subunit | 0 | 0 |
| K04335 | minor curlin subunit | 0 | 0 |
| K04336 | curli production protein | 0 | 0 |
| K04761 | LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator | 1 | 7 |
| K05851 | adenylate cyclase, class 1 [EC:4.6.1.1] | 1 | 7 |
| K06204 | RNA polymerase-binding transcription factor | 2 | 14 |
| K07173 | S-ribosylhomocysteine lyase [EC:4.4.1.21] | 1 | 7 |
| K07638 | two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] | 1 | 7 |
| K07648 | two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3] | 1 | 7 |
| K07659 | two-component system, OmpR family, phosphate regulon response regulator OmpR | 1 | 7 |
| K07676 | two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3] | 1 | 7 |
| K07677 | two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3] | 1 | 7 |
| K07678 | two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] | 0 | 0 |
| K07687 | two-component system, NarL family, captular synthesis response regulator RcsB | 1 | 7 |
| K07689 | two-component system, NarL family, invasion response regulator UvrY | 0 | 0 |
| K07773 | two-component system, OmpR family, aerobic respiration control protein ArcA | 1 | 7 |
| K07781 | LuxR family transcriptional regulator, capsular biosynthesis positive transcription factor | 0 | 0 |
| K07782 | LuxR family transcriptional regulator, quorum-sensing system regulator SdiA | 0 | 0 |
| K10914 | CRP/FNR family transcriptional regulator, cyclic AMP receptor protein | 1 | 7 |
| K11531 | lsr operon transcriptional repressor | 0 | 6 |
| K11931 | poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase [EC:3.5.1.-] | 0 | 0 |
| K11935 | biofilm PGA synthesis protein PgaA | 0 | 0 |
| K11936 | poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-] | 0 | 0 |
| K11937 | biofilm PGA synthesis protein PgaD | 0 | 0 |
| K12687 | antigen 43 | 0 | 0 |
| K14051 | c-di-GMP phosphodiesterase Gmr [EC:3.1.4.52] | 0 | 0 |
| K18502 | small regulatory RNA DsrA | 0 | 0 |
| K18504 | small regulatory RNA ArcZ | 0 | 0 |
| K18509 | small regulatory RNA RydC | 0 | 0 |
| K18515 | small regulatory RNA CsrB | 0 | 0 |
| K18516 | small regulatory RNA CsrC | 0 | 0 |
| K18518 | small regulatory RNA RprA | 0 | 0 |
| K18521 | small regulatory RNA GcvB | 0 | 0 |
| K18522 | small regulatory RNA OmrA | 0 | 0 |
| K18523 | small regulatory RNA OmrB | 0 | 0 |
| K18528 | small regulatory RNA OxyS | 0 | 0 |
| K18968 | diguanylate cyclase [EC:2.7.7.65] | 0 | 0 |
| K21084 | diguanylate cyclase [EC:2.7.7.65] | 0 | 0 |
| K21085 | diguanylate cyclase [EC:2.7.7.65] | 0 | 0 |
| K21086 | c-di-GMP phosphodiesterase [EC:3.1.4.52] | 0 | 0 |
| K21087 | flagellar brake protein | 0 | 0 |
| K21088 | diguanylate cyclase [EC:2.7.7.65] | 0 | 0 |
| K21089 | MerR family transcriptional regulator, activator of the csg genes | 0 | 0 |
| K21090 | c-di-GMP phosphodiesterase [EC:3.1.4.52] | 0 | 0 |
| K21091 | small regulatory RNA McaS | 0 | 0 |