K03087
Help to interpret the results
Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Kegg Ortholog K03087
Protein list: lists the 7 occurences of the Kegg Ortholog within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Kegg Ortholog of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Kegg Ortholog has been clustered.
Orthogroups are shown in red if they are annotated with that particular Kegg Ortholog in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Kegg Ortholog prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Kegg Ortholog.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Kegg Ortholog prediction.
Description
External link |
K03087 |
KO |
K03087 |
Description |
RNA polymerase nonessential primary-like sigma factor |
KO part of 2 pathways
KO part of 0 modules
Occurence in the database
K03087 is associated with 7 different
proteins
|
The 7 proteins are classified into 1 different orthogroup(s)
|
|
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_2383 |
FBDBKF_18965 |
11096 |
12088 |
-1 |
rpoS |
RNA polymerase sigma factor RpoS |
Morganella morganii S1 |
1 |
group_2383 |
EHELCC_18710 |
11096 |
12088 |
-1 |
rpoS |
RNA polymerase sigma factor RpoS |
Morganella morganii S2 |
2 |
group_2383 |
NLDBIP_18595 |
13425 |
14417 |
1 |
rpoS |
RNA polymerase sigma factor RpoS |
Morganella morganii S4 |
3 |
group_2383 |
LHKJJB_18580 |
11096 |
12088 |
-1 |
rpoS |
RNA polymerase sigma factor RpoS |
Morganella morganii S3 |
4 |
group_2383 |
HKOGLL_18315 |
11096 |
12088 |
-1 |
rpoS |
RNA polymerase sigma factor RpoS |
Morganella morganii S5 |
5 |
group_2383 |
F4V73_RS13875 |
412519 |
413520 |
-1 |
rpoS |
RNA polymerase sigma factor RpoS |
Morganella psychrotolerans |
6 |
group_2383 |
PMI_RS11015 |
2425405 |
2426394 |
-1 |
rpoS |
RNA polymerase sigma factor RpoS |
Proteus mirabilis HI4320 |