Orthogroup:group_556


Homologs in group_556

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_01400 FBDBKF_01400 Morganella morganii S1 pdxJ pyridoxine 5'-phosphate synthase
EHELCC_00145 EHELCC_00145 Morganella morganii S2 pdxJ pyridoxine 5'-phosphate synthase
NLDBIP_03315 NLDBIP_03315 Morganella morganii S4 pdxJ pyridoxine 5'-phosphate synthase
LHKJJB_04830 LHKJJB_04830 Morganella morganii S3 pdxJ pyridoxine 5'-phosphate synthase
HKOGLL_02215 HKOGLL_02215 Morganella morganii S5 pdxJ pyridoxine 5'-phosphate synthase
F4V73_RS01995 F4V73_RS01995 Morganella psychrotolerans pdxJ pyridoxine 5'-phosphate synthase
PMI_RS09305 PMI_RS09305 Proteus mirabilis HI4320 pdxJ pyridoxine 5'-phosphate synthase

Distribution of group_556 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_556 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_556

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_556.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 pdxJ 7

Product

# Product Occurence
1 pyridoxine 5'-phosphate synthase 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0854 7 H Coenzyme transport and metabolism (H) Pyridoxine 5'-phosphate synthase PdxJ

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03474 7 pyridoxine 5-phosphate synthase [EC:2.6.99.2] Vitamin B6 metabolism
Metabolic pathways
Biosynthesis of cofactors		 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P

Pfam domain Annotation(s)

Domain ID Occurences Description
PF03740 7 Pyridoxal phosphate biosynthesis protein PdxJ

Annotations of the 259 SwissProt hits

Annotation Number of occurrences
Pyridoxine 5'-phosphate synthase 258
Pyridoxine 5'-phosphate synthase (Fragment) 1

Protein length

Unique protein length 243

Protein length distribution