Orthogroup:group_282



Homologs in group_282

Help

8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_06230 FBDBKF_06230 Morganella morganii S1 rapA RNA polymerase-associated protein RapA
EHELCC_09275 EHELCC_09275 Morganella morganii S2 rapA RNA polymerase-associated protein RapA
NLDBIP_09655 NLDBIP_09655 Morganella morganii S4 rapA RNA polymerase-associated protein RapA
LHKJJB_08100 LHKJJB_08100 Morganella morganii S3 rapA RNA polymerase-associated protein RapA
HKOGLL_07650 HKOGLL_07650 Morganella morganii S5 rapA RNA polymerase-associated protein RapA
F4V73_RS15685 F4V73_RS15685 Morganella psychrotolerans rapA RNA polymerase-associated protein RapA
PMI_RS11515 PMI_RS11515 Proteus mirabilis HI4320 rapA RNA polymerase-associated protein RapA
PMI_RS12260 PMI_RS12260 Proteus mirabilis HI4320 - DEAD/DEAH box helicase

Distribution of group_282 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_282 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_282

Orthogroup content: 8 members

Help

This page summarizes the annotation of all members of the orthologous group group_282.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rapA 7
2 - 1

Product

# Product Occurence
1 RNA polymerase-associated protein RapA 7
2 DEAD/DEAH box helicase 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0553 8 KL Transcription (K)
Replication, recombination and repair (L)
Superfamily II DNA or RNA helicase, SNF2 family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03580 7 ATP-dependent helicase HepA [EC:5.6.2.-] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00176 8 SNF2-related domain
PF00271 8 Helicase conserved C-terminal domain
PF12137 7 RNA polymerase recycling family C-terminal
PF18337 7 RapA N-terminal Tudor like domain
PF18339 7 RapA N-terminal Tudor like domain 1

Annotations of the 305 SwissProt hits

Annotation Number of occurrences
ATP-dependent DNA helicase DDM1 1
ATP-dependent RNA helicase DBP7 4
ATP-dependent RNA helicase DBP8 5
ATP-dependent RNA helicase DDX42 1
ATP-dependent RNA helicase DED1 1
ATP-dependent RNA helicase DRS1 2
ATP-dependent RNA helicase DbpA 1
ATP-dependent RNA helicase RhlB 2
ATP-dependent RNA helicase dbp10 1
ATP-dependent RNA helicase dbp7 1
ATP-dependent RNA helicase dbp8 7
ATP-dependent RNA helicase fal1 1
ATP-dependent helicase brm 1
ATP-dependent helicase fft1 1
ATP-dependent helicase fft2 1
ATP-dependent helicase fft3 1
CHD3-type chromatin-remodeling factor CHR7 1
Chromatin remodeling factor mit1 1
Chromatin-remodeling ATPase INO80 13
Chromatin-remodeling complex ATPase chain Iswi 1
Chromatin-remodeling complex ATPase chain isw-1 1
Chromo domain-containing protein 1 1
Chromodomain helicase hrp1 1
Chromodomain-helicase-DNA-binding protein 1 3
Chromodomain-helicase-DNA-binding protein 1-like 3
Chromodomain-helicase-DNA-binding protein 2 2
Chromodomain-helicase-DNA-binding protein 3 2
Chromodomain-helicase-DNA-binding protein 3 homolog 1
Chromodomain-helicase-DNA-binding protein 4 2
Chromodomain-helicase-DNA-binding protein 5 3
Chromodomain-helicase-DNA-binding protein 6 3
Chromodomain-helicase-DNA-binding protein 7 3
Chromodomain-helicase-DNA-binding protein 8 5
Chromodomain-helicase-DNA-binding protein 9 2
Chromodomain-helicase-DNA-binding protein Mi-2 homolog 1
DEAD-box ATP-dependent RNA helicase 18 1
DEAD-box ATP-dependent RNA helicase 34 1
DEAD-box ATP-dependent RNA helicase 49 1
DEAD-box ATP-dependent RNA helicase 50 1
DEAD-box ATP-dependent RNA helicase CshA 1
DEAD-box ATP-dependent RNA helicase RhpA 2
DNA annealing helicase and endonuclease ZRANB3 2
DNA excision repair protein ERCC-6-like 4
DNA repair and recombination protein RAD54 1
DNA repair and recombination protein RAD54-like 13
DNA repair and recombination protein RAD54-like (Fragment) 1
DNA repair and recombination protein RAD54B 3
DNA repair protein RAD16 1
DNA repair protein rhp54 1
Eukaryotic initiation factor 4A 1
Helicase SWR1 6
Helicase domino 1
Helicase ssl-1 1
Helicase-like transcription factor 1
Helicase-like transcription factor CHR27 1
Helicase-like transcription factor CHR28 1
ISWI chromatin-remodeling complex ATPase CHR11 1
ISWI chromatin-remodeling complex ATPase ISW1 1
ISWI chromatin-remodeling complex ATPase ISW2 2
Lymphocyte-specific helicase 1
Lymphoid-specific helicase 1
Pre-mRNA-processing ATP-dependent RNA helicase PRP5 1
Probable ATP-dependent DNA helicase CHR12 1
Probable ATP-dependent DNA helicase CHR23 1
Probable ATP-dependent DNA helicase CHR719 1
Probable ATP-dependent RNA helicase DDX4 1
Probable ATP-dependent RNA helicase DDX43 1
Probable ATP-dependent RNA helicase DDX46 4
Probable ATP-dependent RNA helicase MJ0669 1
Probable ATP-dependent helicase PF08_0048 1
Probable chromatin-remodeling complex ATPase chain 1
Probable global transactivator 1
Probable global transcription activator SNF2L1 2
Probable helicase CHR10 1
Protein CHROMATIN REMODELING 19 1
Protein CHROMATIN REMODELING 24 1
Protein CHROMATIN REMODELING 25 1
Protein CHROMATIN REMODELING 4 1
Protein CHROMATIN REMODELING 5 1
Putative ATP-dependent RNA helicase R458 1
Putative ATP-dependent RNA helicase T26G10.1 1
RNA helicase CrhR 1
RNA polymerase-associated protein RapA 119
SNF2 domain-containing protein CLASSY 2 1
SNF2 domain-containing protein CLASSY 4 1
SWI/SNF chromatin-remodeling complex subunit snf22 1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 4
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 homolog 1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 2
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 6
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 homolog 1
TATA-binding protein-associated factor BTAF1 1
Transcription termination factor 2 1
Transcriptional regulator ATRX homolog 1
Type I restriction enzyme EcoAI endonuclease subunit 1
Uncharacterized ATP-dependent helicase C17A2.12 1
Uncharacterized ATP-dependent helicase C23E6.02 1
Uncharacterized ATP-dependent helicase C582.10c 1
Uncharacterized ATP-dependent helicase IRC5 1
Uncharacterized ATP-dependent helicase MG018 1
Uncharacterized ATP-dependent helicase MPN_020 1
Uncharacterized ATP-dependent helicase YqhH 1
Uncharacterized ATP-dependent helicase YwqA 1
Zorya protein ZorD 1

Protein length

Min length 961
Max length 968
Mean length (sd) 967.0 (2.4)
Median length 968.0

Protein length distribution