COG0553


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0553, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Superfamily II DNA or RNA helicase, SNF2 family
Function(s) descr. Transcription (K)
Replication, recombination and repair (L)

Occurence in the database

COG0553 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_282 FBDBKF_06230 76944 79850 1 rapA RNA polymerase-associated protein RapA Morganella morganii S1
1 group_282 EHELCC_09275 77516 80422 1 rapA RNA polymerase-associated protein RapA Morganella morganii S2
2 group_282 NLDBIP_09655 77516 80422 1 rapA RNA polymerase-associated protein RapA Morganella morganii S4
3 group_282 LHKJJB_08100 136816 139722 -1 rapA RNA polymerase-associated protein RapA Morganella morganii S3
4 group_282 HKOGLL_07650 136816 139722 -1 rapA RNA polymerase-associated protein RapA Morganella morganii S5
5 group_282 F4V73_RS15685 134365 137271 -1 rapA RNA polymerase-associated protein RapA Morganella psychrotolerans
6 group_282 PMI_RS11515 2537417 2540320 1 rapA RNA polymerase-associated protein RapA Proteus mirabilis HI4320
7 group_282 PMI_RS12260 2718606 2721491 -1 DEAD/DEAH box helicase Proteus mirabilis HI4320