Orthogroup:group_2399


Homologs in group_2399

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_19245 FBDBKF_19245 Morganella morganii S1 rplC 50S ribosomal protein L3
EHELCC_18990 EHELCC_18990 Morganella morganii S2 rplC 50S ribosomal protein L3
NLDBIP_19005 NLDBIP_19005 Morganella morganii S4 rplC 50S ribosomal protein L3
LHKJJB_18860 LHKJJB_18860 Morganella morganii S3 rplC 50S ribosomal protein L3
HKOGLL_18595 HKOGLL_18595 Morganella morganii S5 rplC 50S ribosomal protein L3
F4V73_RS18920 F4V73_RS18920 Morganella psychrotolerans rplC 50S ribosomal protein L3
PMI_RS16150 PMI_RS16150 Proteus mirabilis HI4320 rplC 50S ribosomal protein L3

Distribution of group_2399 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2399 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2399

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2399.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rplC 7

Product

# Product Occurence
1 50S ribosomal protein L3 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0087 7 J Translation, ribosomal structure and biogenesis (J) Ribosomal protein L3

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K02906 7 large subunit ribosomal protein L3 Ribosome -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00297 7 Ribosomal protein L3

Annotations of the 538 SwissProt hits

Annotation Number of occurrences
Large ribosomal subunit protein uL3 533
Large ribosomal subunit protein uL3 (Fragment) 1
Large ribosomal subunit protein uL3c 4

Protein length

Unique protein length 209

Protein length distribution