Orthogroup:group_1478



Homologs in group_1478

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_09540 FBDBKF_09540 Morganella morganii S1 cecR transcriptional regulator CecR
EHELCC_04340 EHELCC_04340 Morganella morganii S2 cecR transcriptional regulator CecR
NLDBIP_04340 NLDBIP_04340 Morganella morganii S4 cecR transcriptional regulator CecR
LHKJJB_14290 LHKJJB_14290 Morganella morganii S3 cecR transcriptional regulator CecR
HKOGLL_12245 HKOGLL_12245 Morganella morganii S5 cecR transcriptional regulator CecR
F4V73_RS00825 F4V73_RS00825 Morganella psychrotolerans cecR transcriptional regulator CecR
PMI_RS03050 PMI_RS03050 Proteus mirabilis HI4320 cecR transcriptional regulator CecR

Distribution of group_1478 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1478 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1478

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1478.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 cecR 7

Product

# Product Occurence
1 transcriptional regulator CecR 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1309 1 K Transcription (K) DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
COG3226 6 K Transcription (K) DNA-binding transcriptional regulator YbjK

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K23777 7 TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00440 7 Bacterial regulatory proteins, tetR family
PF09209 7 HTH-type transcriptional dual regulator CecR, C-terminal domain

Annotations of the 13 SwissProt hits

Annotation Number of occurrences
HTH-type transcriptional dual regulator CecR 2
HTH-type transcriptional regulator MT3513 1
HTH-type transcriptional regulator Mb3439c 1
HTH-type transcriptional regulator RutR 4
HTH-type transcriptional repressor AcnR 2
HTH-type transcriptional repressor NicS 1
HTH-type transcriptional repressor Rv3405c 1
Probable HTH-type transcriptional regulator YttP 1

Protein length

Min length 228
Max length 232
Mean length (sd) 228.6 (1.5)
Median length 228.0

Protein length distribution