Homologs in group_1422

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08780 FBDBKF_08780 91.6 Morganella morganii S1 nrdG anaerobic ribonucleoside-triphosphate reductase-activating protein
EHELCC_12745 EHELCC_12745 91.6 Morganella morganii S2 nrdG anaerobic ribonucleoside-triphosphate reductase-activating protein
NLDBIP_13085 NLDBIP_13085 91.6 Morganella morganii S4 nrdG anaerobic ribonucleoside-triphosphate reductase-activating protein
LHKJJB_13470 LHKJJB_13470 91.6 Morganella morganii S3 nrdG anaerobic ribonucleoside-triphosphate reductase-activating protein
HKOGLL_11560 HKOGLL_11560 91.6 Morganella morganii S5 nrdG anaerobic ribonucleoside-triphosphate reductase-activating protein
PMI_RS17195 PMI_RS17195 72.7 Proteus mirabilis HI4320 nrdG anaerobic ribonucleoside-triphosphate reductase-activating protein

Distribution of the homologs in the orthogroup group_1422

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1422

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A9N8 1.09e-86 253 77 1 155 1 nrdG Anaerobic ribonucleoside-triphosphate reductase-activating protein Escherichia coli (strain K12)
P0A9N9 1.09e-86 253 77 1 155 3 nrdG Anaerobic ribonucleoside-triphosphate reductase-activating protein Escherichia coli O157:H7
Q9L645 1.84e-85 250 76 1 155 3 nrdG Anaerobic ribonucleoside-triphosphate reductase-activating protein Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8Z138 8.75e-85 248 76 1 155 3 nrdG Anaerobic ribonucleoside-triphosphate reductase-activating protein Salmonella typhi
Q9KM76 7.5e-79 233 69 1 152 3 nrdG Anaerobic ribonucleoside-triphosphate reductase-activating protein Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P45080 5.99e-74 221 63 1 155 3 nrdG Anaerobic ribonucleoside-triphosphate reductase-activating protein Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9CM94 1.43e-66 202 58 2 154 3 nrdG Anaerobic ribonucleoside-triphosphate reductase-activating protein Pasteurella multocida (strain Pm70)
P07075 1.85e-43 144 46 4 149 3 NRDG Anaerobic ribonucleoside-triphosphate reductase-activating protein Enterobacteria phage T4
P43751 3.86e-06 48 29 1 75 3 pflA Pyruvate formate-lyase 1-activating enzyme Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0A9N7 9.63e-06 47 32 1 75 3 pflA Pyruvate formate-lyase 1-activating enzyme Shigella flexneri
P0A9N4 9.63e-06 47 32 1 75 1 pflA Pyruvate formate-lyase 1-activating enzyme Escherichia coli (strain K12)
P0A9N5 9.63e-06 47 32 1 75 3 pflA Pyruvate formate-lyase 1-activating enzyme Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9N6 9.63e-06 47 32 1 75 3 pflA Pyruvate formate-lyase 1-activating enzyme Escherichia coli O157:H7
Q46267 5.24e-05 45 27 6 140 3 act Pyruvate formate-lyase-activating enzyme Clostridium pasteurianum
P0A442 6.66e-05 45 37 2 62 3 pflA Pyruvate formate-lyase-activating enzyme Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Q71ZR3 6.66e-05 45 37 2 62 3 pflA Pyruvate formate-lyase-activating enzyme Listeria monocytogenes serotype 4b (strain F2365)
P0A443 6.66e-05 45 37 2 62 3 pflA Pyruvate formate-lyase-activating enzyme Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
P44743 0.000459 42 33 4 90 3 HI_0520 Putative glycyl-radical enzyme activating enzyme HI_0520 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09995
Feature type CDS
Gene nrdG
Product anaerobic ribonucleoside-triphosphate reductase-activating protein
Location 103694 - 104161 (strand: -1)
Length 468 (nucleotides) / 155 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1422
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF04055 Radical SAM superfamily
PF13353 4Fe-4S single cluster domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1180 Posttranslational modification, protein turnover, chaperones (O) O Pyruvate-formate lyase-activating enzyme

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K04068 anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4] - -

Protein Sequence

MNYHQYYPVDVVNGPGTRCTLFVSGCVHQCRGCYNQSTWRTDSGALYTPELEAQIIADLCDERIKRQGITLSGGDPLHPQNVPVILALVQRIRLECPPEKDIWMWTGYKLDELNDAQREVIEHINVLVDGKFVQELHDPMIIWRGSSNQVIHYLR

Flanking regions ( +/- flanking 50bp)

AGTAAAACGCCGCGTGAAACATCTGTCAAACGGGCAGTTAGGCTGAGTATATGAATTATCATCAGTACTATCCCGTTGATGTCGTCAACGGGCCGGGTACACGCTGTACATTGTTTGTTTCAGGCTGCGTCCATCAGTGCCGCGGCTGCTATAACCAAAGCACCTGGCGCACAGATTCCGGTGCGCTTTATACGCCGGAACTGGAAGCACAGATTATCGCCGACCTCTGTGATGAACGGATCAAACGTCAGGGAATTACACTGTCAGGCGGTGATCCGCTGCATCCGCAGAATGTGCCGGTGATTTTGGCACTGGTGCAGCGCATCCGCCTGGAATGCCCGCCGGAGAAAGATATCTGGATGTGGACCGGCTATAAACTGGATGAACTGAATGATGCTCAGAGGGAAGTGATTGAGCACATCAATGTGTTAGTCGACGGGAAGTTTGTGCAGGAGCTGCATGATCCGATGATTATCTGGCGCGGCAGTTCAAATCAGGTTATTCACTATCTGCGCTGATCCGCGACCAGTGCAGTTTCTTACCAAACCCCAGCGTGTTATTAACCATC