Orthogroup:group_108


Homologs in group_108

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11 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_01290 FBDBKF_01290 Morganella morganii S1 tssB type VI secretion system contractile sheath small subunit
EHELCC_00255 EHELCC_00255 Morganella morganii S2 tssB type VI secretion system contractile sheath small subunit
NLDBIP_03205 NLDBIP_03205 Morganella morganii S4 tssB type VI secretion system contractile sheath small subunit
LHKJJB_04720 LHKJJB_04720 Morganella morganii S3 tssB type VI secretion system contractile sheath small subunit
HKOGLL_02325 HKOGLL_02325 Morganella morganii S5 tssB type VI secretion system contractile sheath small subunit
F4V73_RS00095 F4V73_RS00095 Morganella psychrotolerans tssB type VI secretion system contractile sheath small subunit
F4V73_RS02380 F4V73_RS02380 Morganella psychrotolerans tssB type VI secretion system contractile sheath small subunit
F4V73_RS07025 F4V73_RS07025 Morganella psychrotolerans tssB type VI secretion system contractile sheath small subunit
F4V73_RS09365 F4V73_RS09365 Morganella psychrotolerans tssB type VI secretion system contractile sheath small subunit
F4V73_RS16870 F4V73_RS16870 Morganella psychrotolerans tssB type VI secretion system contractile sheath small subunit
PMI_RS03685 PMI_RS03685 Proteus mirabilis HI4320 tssB type VI secretion system contractile sheath small subunit

Distribution of group_108 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_108 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_108

Orthogroup content: 11 members

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This page summarizes the annotation of all members of the orthologous group group_108.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 tssB 11

Product

# Product Occurence
1 type VI secretion system contractile sheath small subunit 11

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3516 11 U Intracellular trafficking, secretion, and vesicular transport (U) Predicted component TssA of the type VI protein secretion system

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K11901 11 type VI secretion system protein ImpB Biofilm formation - Pseudomonas aeruginosa -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF05591 11 Type VI secretion system, VipA, VC_A0107 or Hcp2

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG038379 7 Type VI secretion system contractile sheath small subunit TssB/VipA VF0480 Effector delivery system
VFG041072 1 type VI secretion system contractile sheath small subunit VF1036 Effector delivery system
VFG041204 1 type VI secretion system contractile sheath small subunit VF1263 Effector delivery system
VFG048624 1 type VI secretion system contractile sheath small subunit VipA VF0569 Effector delivery system

Annotations of the 1 SwissProt hits

Annotation Number of occurrences
Type VI secretion system sheath protein TssB1 1

Protein length

Min length 165
Max length 185
Mean length (sd) 168.4 (6.6)
Median length 165.0

Protein length distribution