Homologs in group_544

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01290 FBDBKF_01290 73.3 Morganella morganii S1 tssB type VI secretion system contractile sheath small subunit
EHELCC_00255 EHELCC_00255 73.3 Morganella morganii S2 tssB type VI secretion system contractile sheath small subunit
NLDBIP_03205 NLDBIP_03205 73.3 Morganella morganii S4 tssB type VI secretion system contractile sheath small subunit
LHKJJB_04720 LHKJJB_04720 73.3 Morganella morganii S3 tssB type VI secretion system contractile sheath small subunit
HKOGLL_02325 HKOGLL_02325 73.3 Morganella morganii S5 tssB type VI secretion system contractile sheath small subunit
F4V73_RS02380 F4V73_RS02380 73.9 Morganella psychrotolerans tssB type VI secretion system contractile sheath small subunit

Distribution of the homologs in the orthogroup group_544

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_544

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9I749 1.37e-15 73 34 2 117 1 tssB1 Type VI secretion system sheath protein TssB1 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS03685
Feature type CDS
Gene tssB
Product type VI secretion system contractile sheath small subunit
Location 829313 - 829813 (strand: -1)
Length 501 (nucleotides) / 166 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_544
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3516 Intracellular trafficking, secretion, and vesicular transport (U) U Predicted component TssA of the type VI protein secretion system

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11901 type VI secretion system protein ImpB Biofilm formation - Pseudomonas aeruginosa -

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG038379 Type VI secretion system contractile sheath small subunit TssB/VipA VF0480 Effector delivery system

Protein Sequence

MSKKNLGSVAPKERINIKYTPNTGGAQAEVELPLNMLIVGDMKGKTEETPIEDRKAISVNQNNFNSVMESAGINLNINVRNTLEESSDSELNVNLDVKSLQDFSPDSIARQVPELNKLLELREALVALKGPLGNVPAFRKRLQELLENQETREQLLKELDIAANQK

Flanking regions ( +/- flanking 50bp)

TTTATGGAATTAAGAAGTTATTGCATACTCATACAAGGAGCTTAACTTAAATGAGTAAGAAAAATCTCGGTAGTGTTGCCCCTAAAGAAAGGATTAATATTAAATATACGCCAAATACTGGCGGAGCTCAGGCTGAAGTCGAACTTCCATTGAATATGTTGATTGTTGGGGATATGAAAGGTAAAACGGAAGAGACCCCCATTGAAGATCGCAAAGCGATTTCAGTCAATCAAAACAACTTCAATTCTGTTATGGAAAGTGCTGGCATTAATTTAAATATTAATGTTCGCAATACCTTAGAAGAAAGCAGTGATTCAGAGCTTAATGTTAATCTTGATGTGAAATCTTTACAGGATTTCTCTCCTGATAGTATCGCTCGCCAAGTGCCCGAATTAAATAAACTTCTCGAATTGCGTGAAGCTTTAGTTGCATTAAAAGGTCCTCTAGGCAATGTCCCAGCTTTTAGAAAGCGTCTTCAAGAACTACTTGAAAATCAAGAAACTCGCGAACAGCTTCTAAAAGAGCTCGATATTGCTGCTAATCAAAAATAATGTTTATAGAGGATTATTTCATGTCACTAAATGCAGAAGCTCAAGAGCAA