Homologs in group_544

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01290 FBDBKF_01290 100.0 Morganella morganii S1 tssB type VI secretion system contractile sheath small subunit
EHELCC_00255 EHELCC_00255 100.0 Morganella morganii S2 tssB type VI secretion system contractile sheath small subunit
NLDBIP_03205 NLDBIP_03205 100.0 Morganella morganii S4 tssB type VI secretion system contractile sheath small subunit
HKOGLL_02325 HKOGLL_02325 100.0 Morganella morganii S5 tssB type VI secretion system contractile sheath small subunit
F4V73_RS02380 F4V73_RS02380 96.4 Morganella psychrotolerans tssB type VI secretion system contractile sheath small subunit
PMI_RS03685 PMI_RS03685 73.3 Proteus mirabilis HI4320 tssB type VI secretion system contractile sheath small subunit

Distribution of the homologs in the orthogroup group_544

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_544

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9I749 6.45e-11 60 31 2 117 1 tssB1 Type VI secretion system sheath protein TssB1 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_04720
Feature type CDS
Gene tssB
Product type VI secretion system contractile sheath small subunit
Location 227639 - 228136 (strand: 1)
Length 498 (nucleotides) / 165 (amino acids)

Contig

Accession ZDB_361
Length 286024 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_544
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3516 Intracellular trafficking, secretion, and vesicular transport (U) U Predicted component TssA of the type VI protein secretion system

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11901 type VI secretion system protein ImpB Biofilm formation - Pseudomonas aeruginosa -

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG038379 Type VI secretion system contractile sheath small subunit TssB/VipA VF0480 Effector delivery system

Protein Sequence

MSKNDLGSVAPKERINIKYTPHDGGSQAEIELPHHLLVIGDFKNKEEDTPIEERKTVSIDQNNFNSVMENSGINLTFAVKNHLEEESDSEIPVNLDIKSLRDFSPDNIAKNVPELNKLLELREALVALKGPLGNIPAFRKQLQALLDNESTREQLLKELDIVSNK

Flanking regions ( +/- flanking 50bp)

TATCTATACGGGAAAGATAATTCCCTCACTGAAATTCATAAGGATAGTCAATGAGTAAAAATGACCTTGGCAGCGTTGCGCCGAAAGAACGTATTAATATTAAATACACACCTCATGACGGCGGAAGCCAGGCAGAAATTGAATTACCTCATCATCTTCTGGTCATTGGTGACTTCAAAAATAAGGAAGAAGATACACCGATTGAAGAACGAAAAACTGTTTCTATCGATCAGAATAATTTCAATTCAGTGATGGAAAACTCAGGTATTAATCTGACATTTGCTGTTAAAAATCACCTTGAAGAAGAAAGTGATTCAGAAATCCCTGTCAATCTTGATATTAAATCCCTCCGTGACTTCTCCCCTGACAATATTGCGAAAAATGTTCCTGAATTAAATAAGTTACTTGAACTGCGGGAAGCATTAGTTGCACTGAAAGGACCTCTGGGAAATATCCCCGCATTCCGTAAACAGCTTCAGGCGCTGCTGGATAATGAATCCACCCGTGAGCAACTGTTAAAAGAACTGGATATCGTCAGCAATAAATAATTGATGGGAATCGTGTTATGTCTACAGCAACAGAAAGTGTAAAACAGGAA