COG3283


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3283, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Transcriptional regulator TyrR of aromatic amino acids metabolism
Function(s) descr. Transcription (K)
Amino acid transport and metabolism (E)

Occurence in the database

COG3283 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_998 FBDBKF_05580 123824 125410 -1 tyrR transcriptional regulator TyrR Morganella morganii S1
1 group_998 EHELCC_12010 56084 57670 1 tyrR transcriptional regulator TyrR Morganella morganii S2
2 group_998 NLDBIP_12350 56039 57625 1 tyrR transcriptional regulator TyrR Morganella morganii S4
3 group_998 LHKJJB_12210 56084 57670 1 tyrR transcriptional regulator TyrR Morganella morganii S3
4 group_998 HKOGLL_10825 56084 57670 1 tyrR transcriptional regulator TyrR Morganella morganii S5
5 group_998 F4V73_RS03725 789842 791437 1 tyrR transcriptional regulator TyrR Morganella psychrotolerans
6 group_998 PMI_RS06610 1447787 1449352 -1 tyrR transcriptional regulator TyrR Proteus mirabilis HI4320