Homologs in group_212

Help

8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13730 FBDBKF_13730 31.9 Morganella morganii S1 - MFS transporter
EHELCC_11400 EHELCC_11400 31.9 Morganella morganii S2 - MFS transporter
NLDBIP_11745 NLDBIP_11745 31.9 Morganella morganii S4 - MFS transporter
LHKJJB_11605 LHKJJB_11605 31.9 Morganella morganii S3 - MFS transporter
HKOGLL_10215 HKOGLL_10215 31.9 Morganella morganii S5 - MFS transporter
F4V73_RS12600 F4V73_RS12600 32.4 Morganella psychrotolerans - nucleoside permease
PMI_RS04170 PMI_RS04170 18.6 Proteus mirabilis HI4320 - MFS transporter
PMI_RS07650 PMI_RS07650 28.1 Proteus mirabilis HI4320 - MFS transporter

Distribution of the homologs in the orthogroup group_212

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_212

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76417 6.73e-67 221 34 9 422 1 yegT Putative nucleoside transporter YegT Escherichia coli (strain K12)
P0AFF5 1.17e-45 166 29 11 412 3 nupG Nucleoside permease NupG Shigella flexneri
P0AFF4 1.17e-45 166 29 11 412 1 nupG Nucleoside permease NupG Escherichia coli (strain K12)
P45562 6.76e-42 155 29 8 431 1 xapB Xanthosine permease Escherichia coli (strain K12)
P39589 9.85e-05 48 24 11 311 3 ywbF Uncharacterized transporter YwbF Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS14680
Feature type CDS
Gene -
Product MFS transporter
Location 3254604 - 3255851 (strand: 1)
Length 1248 (nucleotides) / 415 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_212
Orthogroup size 9
N. genomes 7

Actions

Genomic region

Domains

PF03825 Nucleoside H+ symporter

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2211 Carbohydrate transport and metabolism (G) G Na+/melibiose symporter or related transporter

Protein Sequence

MDMKITSRLLIMMFVQYFMQGAWNMTMGLVLSSYGMASIIGNAYALLGVATIISPLFIGMVADRFFASQKVMGILHLINAVVILCVPQFIEAQNSGMTLFLIFIIGLLFYPTTALSNSISFSHINGVKYFPIIRVFGTFGFMAIGFILGEMGFSGSTMTWYIASAVGVLLGFYCFTLPNTPPKAKGQPFSLRDILCLDALSLFKDRYFAILMFSIFILMIPKTAYSAYIPVFIKALGFDNAASIMQIGIACEVLFMFVLSFFLMKFGFKITLLLGAVSWIIRSMFFSYAAVNTELYFIVIGLMLQGLCWDFFFTAGDIYVDRKAKPEIRAQAQGLRFIVSNGFGLLFASTICGQIFNTTVTETGDAALPQWSTFWVYPAIVAAVVTLFFIFFFKDDVSKKRNSENKETSRGITAP

Flanking regions ( +/- flanking 50bp)

TGTTGCCTACGACGGATTAACGTTAGAAACCAATTAAGAGGGGTACGACAATGGATATGAAAATAACTTCTCGCCTACTTATTATGATGTTTGTGCAATATTTCATGCAAGGAGCATGGAATATGACCATGGGACTCGTATTAAGTAGTTATGGTATGGCAAGCATTATCGGCAATGCTTATGCCTTATTAGGTGTCGCGACAATTATCTCCCCCTTATTTATTGGTATGGTCGCAGATCGTTTCTTTGCTTCACAAAAAGTCATGGGGATACTTCATTTAATTAATGCCGTCGTTATTCTCTGTGTTCCCCAATTTATTGAAGCTCAAAACAGTGGCATGACATTATTTTTAATTTTTATTATTGGCTTATTGTTTTATCCAACCACTGCGCTATCTAATAGCATTAGTTTCTCCCATATTAATGGGGTTAAATATTTCCCAATTATTCGCGTATTTGGTACGTTTGGTTTTATGGCAATTGGTTTTATATTGGGTGAAATGGGCTTCTCTGGTAGCACAATGACTTGGTATATCGCTTCTGCAGTTGGTGTATTACTCGGTTTCTATTGTTTTACATTACCTAATACGCCACCTAAAGCGAAAGGCCAGCCTTTCTCACTACGCGATATTTTATGTTTAGATGCATTGTCTTTATTTAAAGATCGCTACTTTGCTATTTTGATGTTTAGCATCTTTATTTTAATGATCCCCAAAACAGCTTATTCTGCTTATATTCCTGTCTTTATTAAAGCATTAGGCTTTGATAATGCAGCTTCTATTATGCAAATAGGGATCGCTTGCGAAGTTCTGTTTATGTTTGTTTTGTCATTCTTCTTAATGAAATTTGGCTTCAAAATTACACTACTGCTAGGAGCCGTGAGCTGGATCATACGCTCTATGTTTTTCTCTTATGCTGCAGTAAATACAGAGCTTTACTTTATCGTCATCGGATTAATGCTACAGGGATTATGTTGGGATTTCTTCTTTACTGCAGGAGATATCTATGTCGATCGCAAAGCAAAACCTGAAATTCGTGCACAAGCACAAGGTCTGCGCTTTATTGTCTCTAATGGTTTCGGCTTACTATTTGCTTCCACTATTTGTGGTCAAATCTTTAACACAACCGTAACTGAAACAGGTGATGCAGCATTACCACAATGGTCAACATTCTGGGTCTATCCTGCCATTGTAGCGGCGGTGGTAACCCTATTCTTTATTTTCTTCTTTAAAGATGATGTTTCTAAAAAAAGAAATAGTGAAAATAAAGAAACATCACGAGGAATTACAGCACCTTAATTTTAAAATAAAAAATAAGCCAACGTCAGGAGCAAACCATGGATGCATTA