COG2211


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2211, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Na+/melibiose symporter or related transporter
Function(s) descr. Carbohydrate transport and metabolism (G)

Occurence in the database

COG2211 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3675 EHELCC_06465 35870 37099 -1 MFS transporter Morganella morganii S2
1 group_3675 NLDBIP_06785 35743 36972 -1 MFS transporter Morganella morganii S4
2 group_3675 HKOGLL_04605 232669 233898 1 MFS transporter Morganella morganii S5
3 group_4153 F4V73_RS12540 99393 100925 1 MFS transporter Morganella psychrotolerans
4 group_2107 F4V73_RS16460 110048 111535 1 ampG muropeptide MFS transporter AmpG Morganella psychrotolerans
5 group_212 PMI_RS14680 3254604 3255851 1 MFS transporter Proteus mirabilis HI4320