Homologs in group_1456

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09280 FBDBKF_09280 24.9 Morganella morganii S1 sipB Cell invasion protein SipB
EHELCC_10130 EHELCC_10130 24.9 Morganella morganii S2 sipB Cell invasion protein SipB
NLDBIP_10475 NLDBIP_10475 24.9 Morganella morganii S4 sipB Cell invasion protein SipB
LHKJJB_10880 LHKJJB_10880 24.9 Morganella morganii S3 sipB Cell invasion protein SipB
HKOGLL_13940 HKOGLL_13940 24.9 Morganella morganii S5 sipB Cell invasion protein SipB
F4V73_RS10685 F4V73_RS10685 24.0 Morganella psychrotolerans sctE type III secretion system translocon subunit SctE

Distribution of the homologs in the orthogroup group_1456

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1456

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q2T711 6.01e-15 82 26 8 378 3 bipB Translocator protein BipB Burkholderia thailandensis (strain ATCC 700388 / DSM 13276 / CCUG 48851 / CIP 106301 / E264)
A3P6Z7 4.88e-14 79 26 9 376 3 bipB Translocator protein BipB Burkholderia pseudomallei (strain 1106a)
A3NLD5 5.46e-14 79 27 11 377 3 bipB Translocator protein BipB Burkholderia pseudomallei (strain 668)
Q3JL23 5.75e-14 79 27 11 377 3 bipB Translocator protein BipB Burkholderia pseudomallei (strain 1710b)
Q63K34 5.8e-14 79 27 11 377 1 bipB Translocator protein BipB Burkholderia pseudomallei (strain K96243)
Q62B07 5.8e-14 79 27 11 377 3 bipB Translocator protein BipB Burkholderia mallei (strain ATCC 23344)
A2S1Q0 5.8e-14 79 27 11 377 3 bipB Translocator protein BipB Burkholderia mallei (strain NCTC 10229)
A3MCG8 5.8e-14 79 27 11 377 3 bipB Translocator protein BipB Burkholderia mallei (strain NCTC 10247)
Q03945 6.45e-12 72 29 3 185 3 sctE Type 3 secretion system translocon protein SctE Shigella dysenteriae
Q56134 2.16e-10 67 29 4 176 1 sctE1 SPI-1 type 3 secretion system translocon protein SctE Salmonella typhi
Q56019 2.2e-10 67 29 4 176 1 sctE1 SPI-1 type 3 secretion system translocon protein SctE Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q79BT1 2.2e-10 67 29 4 176 3 sctE1 SPI-1 type 3 secretion system translocon protein SctE Salmonella dublin
P18011 1.33e-08 62 29 3 185 1 sctE Type 3 secretion system translocon protein SctE Shigella flexneri

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS13220
Feature type CDS
Gene sctE
Product type III secretion system translocon subunit SctE
Location 2934984 - 2937143 (strand: -1)
Length 2160 (nucleotides) / 719 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1456
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04888 Secretion system effector C (SseC) like family

Kegg Ortholog Annotation(s)

Protein Sequence

MNKINQSNEHSRLASPFVSEEVKNVIKNTTKQANAINNISNYVTTQQQKENQSKFDIPLLRVPHEQERNAKRINIQDDPQYKMTTFSLENDEDNTKPSLAEEEPKNNKKKDDHLDVSAQQNSSLPTSSPDHLENKKSNKDYDFLFLQLSYQHVIHEDILNKIKDPEKFDYYRDKLQKLSNGIDDLKELFKSGFNDLDKTKGAFVDYWMEVYNQIKEKNFKKESEVKSFLNNCNIPDSLIQQLLLGNIHSKVDMEKALEDVFPFLNFPSDFSKLSLDELDNLSKKLDGFFDDSFNYLPNISLSEDKINKITSHTDELKALINKKESESIKKQLAEIRGLFKELTISQSSLELEIASNSLSGMSLLTFLLSKTRELTLKVMLHRSESEQKLFNEMQEVTEKSLKDKVEEQKSLIKKQEEIQFWAGIGLKILGGLLTLVAGVSSIFTAGSSMVLIGVATTLFVADAGLTIADEVYQSIHNKSFMDEIMQPISDAVMEAIDKVSDFLVSLVNSSLDGLKELGLDKKIIEEMKNSIQDKLKMATKILVTVVLFVAATALSFVIGPAMKGISDAVNKISNQQIRQILKKVLNDGLEAVLGKMIKDIIIKALEEALEKIDKQLAKEISKKASIMLNRTVVASKLTNSAATNTVNIYGSVIASKIIQSIAGSKKLTAVLDIIQKLMDKIMETYHENIDSITDILKNLSDKSSVSNKLKSDMIRNISI

Flanking regions ( +/- flanking 50bp)

TCTTGTTGTCCTTAATAAAGAGGAAGAAAAGGAAGAAAAGGAATAATAGTATGAATAAGATTAATCAAAGTAATGAACATAGTAGATTAGCTTCGCCTTTTGTTTCTGAAGAAGTAAAAAATGTTATTAAAAATACTACTAAGCAAGCAAATGCAATTAATAATATAAGTAATTATGTGACTACTCAACAACAGAAGGAGAATCAAAGTAAGTTTGATATACCACTTCTTAGAGTACCTCATGAACAGGAGAGGAATGCGAAAAGAATTAATATTCAAGATGATCCACAATATAAAATGACGACATTTTCACTAGAAAATGATGAAGACAATACTAAGCCTTCCTTAGCAGAAGAAGAACCGAAGAATAATAAAAAAAAAGATGATCATCTTGACGTATCTGCACAACAAAATTCATCATTACCTACTTCCAGTCCCGATCATTTAGAAAATAAAAAATCCAACAAAGATTATGATTTTTTATTTTTACAATTATCTTACCAGCATGTTATACATGAAGATATTTTGAATAAAATTAAAGATCCAGAGAAATTTGATTATTACAGAGATAAATTACAAAAGCTATCTAATGGCATAGATGATTTAAAAGAACTTTTTAAATCTGGCTTCAATGACCTTGATAAAACCAAAGGTGCTTTTGTTGATTACTGGATGGAAGTTTATAACCAAATAAAAGAAAAGAATTTCAAAAAAGAGTCTGAAGTTAAAAGTTTTTTAAATAATTGCAATATTCCTGATTCATTAATTCAACAGTTATTATTAGGAAATATTCACTCTAAAGTGGATATGGAAAAAGCCCTTGAAGATGTTTTCCCTTTCTTAAACTTTCCTAGTGATTTTTCTAAGCTTTCATTAGATGAACTAGATAATTTATCTAAAAAATTGGATGGTTTTTTTGATGATTCTTTTAATTACCTACCAAATATTTCTTTAAGTGAAGATAAAATCAATAAAATTACTTCACATACTGATGAATTAAAGGCATTGATCAACAAAAAAGAAAGTGAATCAATAAAAAAACAATTAGCAGAAATAAGAGGTCTATTTAAAGAACTGACTATTTCACAAAGTTCCTTGGAGCTTGAAATTGCATCTAACTCTTTATCCGGTATGTCATTACTGACATTTCTGTTATCTAAGACACGTGAGTTGACGTTAAAGGTCATGTTACATCGTTCGGAAAGTGAACAGAAACTTTTTAATGAAATGCAAGAGGTGACTGAAAAATCACTTAAAGATAAAGTTGAAGAGCAAAAATCATTAATCAAAAAACAAGAAGAAATTCAGTTTTGGGCTGGTATTGGTTTAAAAATATTAGGCGGATTATTAACGCTTGTTGCAGGTGTTTCTTCTATTTTTACCGCTGGCTCTTCAATGGTATTAATAGGAGTCGCAACAACCTTATTTGTTGCTGATGCTGGGTTAACTATTGCTGATGAAGTGTATCAATCTATTCATAATAAATCTTTTATGGATGAGATTATGCAACCCATATCAGATGCGGTTATGGAAGCTATCGATAAGGTTAGTGATTTTCTAGTGAGTTTAGTTAATAGTTCTTTGGATGGACTCAAAGAATTAGGGCTAGATAAAAAAATCATCGAAGAGATGAAAAATTCAATACAAGACAAATTGAAAATGGCAACTAAAATACTTGTCACAGTCGTTTTATTTGTTGCCGCTACGGCATTGAGTTTTGTTATTGGACCTGCCATGAAAGGTATTTCAGATGCGGTTAATAAAATATCGAATCAGCAAATTAGACAAATACTAAAAAAAGTGCTCAATGATGGACTTGAAGCGGTATTGGGGAAAATGATCAAAGATATCATTATTAAAGCGCTTGAAGAAGCACTGGAAAAAATTGATAAGCAGTTAGCTAAAGAGATTTCTAAAAAAGCAAGTATTATGTTGAATAGAACGGTGGTTGCTTCTAAGTTAACCAATTCAGCAGCAACAAATACTGTTAATATTTATGGTTCTGTTATCGCGTCAAAAATAATCCAGTCTATTGCCGGTAGTAAAAAATTAACTGCGGTTTTAGATATTATTCAAAAATTAATGGATAAGATAATGGAAACTTATCATGAGAATATTGATTCTATAACAGATATTTTAAAAAACCTCAGCGATAAATCTTCAGTAAGTAATAAATTAAAATCAGACATGATAAGAAATATATCTATTTAAATAAAAAATTAGTGAGGTATAAATATGAGTATGAAGATTAATAGTGATAA