Orthogroup:group_1456


Homologs in group_1456

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_09280 FBDBKF_09280 Morganella morganii S1 sipB Cell invasion protein SipB
EHELCC_10130 EHELCC_10130 Morganella morganii S2 sipB Cell invasion protein SipB
NLDBIP_10475 NLDBIP_10475 Morganella morganii S4 sipB Cell invasion protein SipB
LHKJJB_10880 LHKJJB_10880 Morganella morganii S3 sipB Cell invasion protein SipB
HKOGLL_13940 HKOGLL_13940 Morganella morganii S5 sipB Cell invasion protein SipB
F4V73_RS10685 F4V73_RS10685 Morganella psychrotolerans sctE type III secretion system translocon subunit SctE
PMI_RS13220 PMI_RS13220 Proteus mirabilis HI4320 sctE type III secretion system translocon subunit SctE

Distribution of group_1456 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1456 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1456

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1456.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 sipB 5
2 sctE 2

Product

# Product Occurence
1 Cell invasion protein SipB 5
2 type III secretion system translocon subunit SctE 2

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K13285 6 invasin B Bacterial invasion of epithelial cells
Shigellosis
Salmonella infection		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF04888 2 Secretion system effector C (SseC) like family

Annotations of the 13 SwissProt hits

Annotation Number of occurrences
SPI-1 type 3 secretion system translocon protein SctE 3
Translocator protein BipB 8
Type 3 secretion system translocon protein SctE 2

Protein length

Min length 595
Max length 719
Mean length (sd) 618.4 (44.4)
Median length 603.0

Protein length distribution