Homologs in group_152

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9 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07125 FBDBKF_07125 31.3 Morganella morganii S1 pflA pyruvate formate lyase 1-activating protein
EHELCC_03845 EHELCC_03845 31.3 Morganella morganii S2 pflA pyruvate formate lyase 1-activating protein
EHELCC_19995 EHELCC_19995 20.0 Morganella morganii S2 - hypothetical protein
NLDBIP_03845 NLDBIP_03845 31.3 Morganella morganii S4 pflA pyruvate formate lyase 1-activating protein
LHKJJB_09675 LHKJJB_09675 31.3 Morganella morganii S3 pflA pyruvate formate lyase 1-activating protein
HKOGLL_09300 HKOGLL_09300 31.3 Morganella morganii S5 pflA pyruvate formate lyase 1-activating protein
F4V73_RS01310 F4V73_RS01310 32.6 Morganella psychrotolerans pflA pyruvate formate lyase 1-activating protein
PMI_RS03465 PMI_RS03465 30.4 Proteus mirabilis HI4320 pflA pyruvate formate lyase 1-activating protein
PMI_RS13380 PMI_RS13380 26.1 Proteus mirabilis HI4320 cutD choline TMA-lyase-activating enzyme

Distribution of the homologs in the orthogroup group_152

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_152

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P39409 7.85e-128 368 57 1 287 1 yjjW Putative glycyl-radical enzyme activating enzyme YjjW Escherichia coli (strain K12)
A0A069AMK2 6.33e-23 99 28 9 270 3 pflE Trans-4-hydroxy-L-proline dehydratase activating enzyme Clostridioides difficile
E5Y377 2.5e-21 94 26 8 266 1 islB Isethionate sulfite-lyase activating enzyme Bilophila wadsworthia (strain 3_1_6)
Q312S3 3.26e-20 91 26 9 262 2 islB Isethionate sulfite-lyase activating enzyme Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20)
Q38HX2 4.87e-20 91 28 11 279 1 csdA 4-hydroxyphenylacetate decarboxylase activating enzyme Clostridium scatologenes
O68575 2.46e-19 88 27 6 259 3 act Pyruvate formate-lyase-activating enzyme Streptococcus mutans serotype c (strain ATCC 700610 / UA159)
A0A124EH39 3.1e-19 89 29 12 296 3 AUL39_03430 Indoleacetate decarboxylase activating enzyme Tractidigestivibacter scatoligenes
C9YHW3 1.95e-18 87 29 11 279 3 hpdA 4-hydroxyphenylacetate decarboxylase activating enzyme Clostridioides difficile (strain R20291)
C9XIS7 1.95e-18 87 29 11 279 3 hpdA 4-hydroxyphenylacetate decarboxylase activating enzyme Clostridioides difficile (strain CD196)
Q84F14 4.35e-18 85 29 11 279 1 hpdA 4-hydroxyphenylacetate decarboxylase activating enzyme Clostridioides difficile
Q18CP3 4.48e-18 85 29 11 279 3 hpdA 4-hydroxyphenylacetate decarboxylase activating enzyme Clostridioides difficile (strain 630)
P0A9N7 4.76e-18 84 28 9 257 3 pflA Pyruvate formate-lyase 1-activating enzyme Shigella flexneri
P0A9N4 4.76e-18 84 28 9 257 1 pflA Pyruvate formate-lyase 1-activating enzyme Escherichia coli (strain K12)
P0A9N5 4.76e-18 84 28 9 257 3 pflA Pyruvate formate-lyase 1-activating enzyme Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9N6 4.76e-18 84 28 9 257 3 pflA Pyruvate formate-lyase 1-activating enzyme Escherichia coli O157:H7
O87941 2.35e-17 84 26 11 272 2 bssD Benzylsuccinate synthase activating enzyme Thauera aromatica
Q8CTX5 4.09e-17 82 30 5 252 3 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HKI0 4.09e-17 82 30 5 252 3 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
E5Y7I3 9.48e-17 82 24 7 285 3 hpsH (2S)-3-sulfopropanediol sulfolyase activating enzyme Bilophila wadsworthia (strain 3_1_6)
P0A442 4.29e-16 79 27 7 291 3 pflA Pyruvate formate-lyase-activating enzyme Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Q71ZR3 4.29e-16 79 27 7 291 3 pflA Pyruvate formate-lyase-activating enzyme Listeria monocytogenes serotype 4b (strain F2365)
P0A443 4.29e-16 79 27 7 291 3 pflA Pyruvate formate-lyase-activating enzyme Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
A0A318FEA4 1.09e-15 79 31 8 245 3 hpfH (2S)-3-sulfopropanediol dehydratase activating enzyme Klebsiella oxytoca
P44743 3.19e-15 77 24 5 269 3 HI_0520 Putative glycyl-radical enzyme activating enzyme HI_0520 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q727N0 3.41e-15 77 26 10 265 1 iseH Isethionate sulfite-lyase activating enzyme Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)
Q46267 3.88e-15 76 24 5 250 3 act Pyruvate formate-lyase-activating enzyme Clostridium pasteurianum
Q30W71 8.52e-15 76 24 6 272 1 cutD Choline trimethylamine-lyase activating enzyme Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20)
Q7A1W8 1.26e-14 75 28 5 260 3 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus aureus (strain MW2)
Q6GCP9 1.26e-14 75 28 5 260 3 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus aureus (strain MSSA476)
Q6GK89 1.26e-14 75 28 5 260 3 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus aureus (strain MRSA252)
Q7A7X5 1.26e-14 75 28 5 260 1 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus aureus (strain N315)
Q99WZ6 1.26e-14 75 28 5 260 3 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HJF3 1.26e-14 75 28 5 260 3 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus aureus (strain COL)
Q2YV52 1.26e-14 75 28 5 260 3 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q2G1D7 1.26e-14 75 28 5 260 3 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FK43 1.26e-14 75 28 5 260 3 pflA Pyruvate formate-lyase-activating enzyme Staphylococcus aureus (strain USA300)
B8J0R0 2.92e-14 75 26 8 249 1 islB Isethionate sulfite-lyase activating enzyme Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949 / MB)
P43751 7.92e-14 72 25 5 256 3 pflA Pyruvate formate-lyase 1-activating enzyme Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q59026 7.97e-09 58 29 8 169 3 MJ1632 Putative glycyl-radical enzyme activating enzyme MJ1632 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P32675 3.25e-08 57 24 7 261 3 pflC Pyruvate formate-lyase 2-activating enzyme Escherichia coli (strain K12)
P19498 2.23e-05 48 39 1 63 1 frhG Coenzyme F420 hydrogenase subunit gamma Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
P00211 3.24e-05 44 40 1 45 1 None Ferredoxin-2 Desulfomicrobium norvegicum (strain DSM 1741 / NCIMB 8310)
P82853 0.000262 42 35 0 42 3 Ta0517 Probable ferredoxin TA0517 Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS12405
Feature type CDS
Gene -
Product YjjW family glycine radical enzyme activase
Location 2750872 - 2751738 (strand: 1)
Length 867 (nucleotides) / 288 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_152
Orthogroup size 10
N. genomes 7

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Genomic region

Domains

PF04055 Radical SAM superfamily
PF13237 4Fe-4S dicluster domain
PF13353 4Fe-4S single cluster domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1180 Posttranslational modification, protein turnover, chaperones (O) O Pyruvate-formate lyase-activating enzyme

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K04069 pyruvate formate lyase activating enzyme [EC:1.97.1.4] - -

Protein Sequence

MNSRCASINKILPFSCVDGPGNRLAIFLQGCNLRCKNCHNPYTMGICDNCGDCIATCPQQALSLQNGVVNWNSHRCEQCDTCIQQCPRQSSPMTLTYTVDELIAITRKYAAFINGVTVSGGESTLQLPFLIDYFKAIKAAPDLRHLTCLIDSNGTLSLNGWQKIAPFMDGAMIDLKSWSEETHIYLTGRSNQRIKKSIKWLSEHNLLAELRLLYIPEKTDYLENIEPLSQFINSLDESIPIRINAFHQHGVYGEAKNWRSANKEQIINLQNELILRKVNLIKIPNIYT

Flanking regions ( +/- flanking 50bp)

AGCAACAACCAATTGCCATATTGCTGAACGAAAACCACGAGTGATTAGCCATGAACAGCAGATGCGCTTCGATAAATAAAATACTGCCTTTTTCTTGTGTTGATGGCCCAGGCAATCGCCTCGCCATCTTCCTACAAGGATGTAATTTACGCTGTAAGAACTGTCACAATCCCTACACTATGGGGATTTGTGATAACTGCGGGGATTGCATTGCCACTTGCCCTCAGCAAGCTCTCTCGTTGCAAAACGGAGTAGTAAATTGGAACTCTCACCGTTGTGAGCAATGTGATACTTGTATTCAGCAATGTCCTCGCCAATCAAGCCCTATGACATTGACCTATACAGTTGATGAACTAATTGCAATTACGCGTAAATATGCCGCTTTTATCAATGGGGTAACCGTAAGTGGCGGGGAATCTACGTTACAACTTCCATTTTTAATTGATTATTTTAAAGCAATCAAAGCAGCCCCTGATCTTCGACATCTTACCTGTTTAATTGACAGTAATGGCACTCTTTCACTTAATGGTTGGCAAAAAATCGCCCCCTTTATGGATGGTGCGATGATTGATTTAAAAAGTTGGAGTGAAGAAACACATATTTATTTAACCGGACGTAGTAATCAACGTATTAAAAAATCAATCAAATGGTTAAGTGAGCATAATTTACTTGCAGAATTACGCCTTTTATATATTCCAGAAAAAACCGATTATTTAGAGAATATAGAACCGCTTTCCCAGTTTATTAATTCACTTGATGAATCCATTCCAATTCGTATTAATGCGTTTCATCAGCATGGCGTATATGGTGAAGCGAAGAATTGGCGATCCGCAAATAAAGAACAAATCATAAATCTACAAAATGAATTAATACTTAGAAAAGTAAATTTAATTAAAATACCAAATATATATACATAATAATAATTTCTTACTCATTATTATATATTAAATTCATTTCATTTTATTCA