Homologs in group_401

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16080 FBDBKF_16080 55.9 Morganella morganii S1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
EHELCC_16115 EHELCC_16115 55.9 Morganella morganii S2 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
NLDBIP_17225 NLDBIP_17225 55.9 Morganella morganii S4 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
LHKJJB_17145 LHKJJB_17145 55.9 Morganella morganii S3 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
HKOGLL_16695 HKOGLL_16695 55.9 Morganella morganii S5 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
PMI_RS13430 PMI_RS13430 26.7 Proteus mirabilis HI4320 - TetR/AcrR family transcriptional regulator
PMI_RS14640 PMI_RS14640 25.0 Proteus mirabilis HI4320 - TetR family transcriptional regulator

Distribution of the homologs in the orthogroup group_401

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_401

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9RMY4 4.24e-09 57 29 4 164 4 pXO2-48 Uncharacterized HTH-type transcriptional regulator pXO2-48/BXB0055/GBAA_pXO2_0055 Bacillus anthracis
A0R4Z6 2.35e-06 49 31 0 82 1 kstR2 HTH-type transcriptional repressor KstR2 Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
O34619 2.27e-05 46 32 4 127 4 lmrA HTH-type transcriptional regulator LmrA Bacillus subtilis (strain 168)
P9WMB9 6.03e-05 45 30 0 93 1 kstR2 HTH-type transcriptional repressor KstR2 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMB8 6.03e-05 45 30 0 93 3 kstR2 HTH-type transcriptional repressor KstR2 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P0ACT9 8.44e-05 45 26 0 78 3 uidR HTH-type transcriptional regulator UidR Shigella flexneri
P0ACT6 8.44e-05 45 26 0 78 1 uidR HTH-type transcriptional regulator UidR Escherichia coli (strain K12)
P0ACT7 8.44e-05 45 26 0 78 3 uidR HTH-type transcriptional regulator UidR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACT8 8.44e-05 45 26 0 78 3 uidR HTH-type transcriptional regulator UidR Escherichia coli O157:H7
P42097 0.000149 44 23 5 188 4 None Uncharacterized HTH-type transcriptional regulator in lacX 3'region Lactococcus lactis subsp. lactis

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS10995
Feature type CDS
Gene -
Product TetR/AcrR family transcriptional regulator
Location 2420922 - 2421509 (strand: -1)
Length 588 (nucleotides) / 195 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_401
Orthogroup size 8
N. genomes 6

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Genomic region

Domains

PF00440 Bacterial regulatory proteins, tetR family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1309 Transcription (K) K DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA

Protein Sequence

MTSLSEGSKTAREKLLSAARVLFYNHGINGTGIDAIVKRAGVAKKSLYNNFASKDELVAAYLRVRHEEWLSLYKTRLELAMTPKERVMAVFYAYEDHAEFAYENGFRGCGLLNAAAELPAGVPGRQAVREHKEEVEAILVAHLMELMKGKAESAHCMARHLAFLLEGSISRAGLEGNSNCVKQASNIAEQLMEMY

Flanking regions ( +/- flanking 50bp)

ATTCCAAGTAGGTATACTGGTCTACCTACATATAAACAAAGAGGCTGATCATGACATCTTTATCTGAAGGTTCAAAAACTGCCCGAGAAAAACTGCTCAGTGCTGCACGTGTTCTTTTTTATAATCATGGTATTAATGGCACAGGAATTGACGCCATAGTAAAAAGAGCCGGCGTTGCTAAAAAAAGCCTGTACAACAACTTTGCATCCAAAGATGAGTTGGTGGCAGCCTATCTCAGAGTTCGGCATGAAGAATGGCTTTCGTTGTATAAAACCCGGCTGGAACTAGCCATGACACCCAAAGAGAGGGTAATGGCTGTTTTCTATGCTTATGAAGATCATGCTGAATTTGCCTATGAGAACGGTTTTCGCGGCTGCGGCCTTCTGAATGCGGCAGCCGAACTTCCCGCAGGAGTTCCGGGTCGTCAGGCCGTTCGTGAGCACAAAGAAGAGGTGGAAGCGATTCTGGTTGCGCATTTAATGGAACTGATGAAGGGAAAGGCTGAAAGCGCACACTGTATGGCAAGACATCTTGCCTTTCTGCTGGAAGGCAGCATTTCACGAGCCGGGCTGGAAGGTAACAGTAACTGCGTTAAACAGGCCAGCAATATTGCAGAACAGTTGATGGAGATGTACTAATGATTTCTTCGGGACAGCGACTTGGCGGCATAGTAGGTGTGCTTATCGCC