Homologs in group_149

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9 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02620 FBDBKF_02620 58.4 Morganella morganii S1 dadA Glycine/D-amino acid oxidase (deaminating)
EHELCC_03090 EHELCC_03090 58.4 Morganella morganii S2 dadA Glycine/D-amino acid oxidase (deaminating)
NLDBIP_00370 NLDBIP_00370 58.4 Morganella morganii S4 dadA Glycine/D-amino acid oxidase (deaminating)
LHKJJB_01665 LHKJJB_01665 58.4 Morganella morganii S3 dadA Glycine/D-amino acid oxidase (deaminating)
HKOGLL_01705 HKOGLL_01705 58.4 Morganella morganii S5 dadA Glycine/D-amino acid oxidase (deaminating)
F4V73_RS05080 F4V73_RS05080 59.2 Morganella psychrotolerans - FAD-binding oxidoreductase
PMI_RS13060 PMI_RS13060 28.5 Proteus mirabilis HI4320 - FAD-dependent oxidoreductase
PMI_RS14000 PMI_RS14000 57.6 Proteus mirabilis HI4320 - FAD-dependent oxidoreductase
PMI_RS15210 PMI_RS15210 22.2 Proteus mirabilis HI4320 - TIGR03364 family FAD-dependent oxidoreductase

Distribution of the homologs in the orthogroup group_149

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_149

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8GAI3 3.58e-12 72 24 5 255 1 abo 4-methylaminobutanoate oxidase (formaldehyde-forming) Paenarthrobacter nicotinovorans
Q9UL12 1.05e-10 67 26 12 303 1 SARDH Sarcosine dehydrogenase, mitochondrial Homo sapiens
P33642 2.97e-10 65 22 14 415 3 thiO Glycine oxidase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q99LB7 6.59e-10 65 25 12 302 1 Sardh Sarcosine dehydrogenase, mitochondrial Mus musculus
Q64380 1.92e-09 63 24 12 302 1 Sardh Sarcosine dehydrogenase, mitochondrial Rattus norvegicus
Q88Q83 1.31e-08 60 20 14 415 1 thiO Glycine oxidase Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
B1JHH1 2.6e-08 59 24 11 263 3 solA N-methyl-L-tryptophan oxidase Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q669J9 2.6e-08 59 24 11 263 3 solA N-methyl-L-tryptophan oxidase Yersinia pseudotuberculosis serotype I (strain IP32953)
A4TLT6 2.6e-08 59 24 11 263 3 solA N-methyl-L-tryptophan oxidase Yersinia pestis (strain Pestoides F)
Q1CI06 2.6e-08 59 24 11 263 3 solA N-methyl-L-tryptophan oxidase Yersinia pestis bv. Antiqua (strain Nepal516)
A9R633 2.6e-08 59 24 11 263 3 solA N-methyl-L-tryptophan oxidase Yersinia pestis bv. Antiqua (strain Angola)
P58526 2.6e-08 59 24 11 263 3 solA N-methyl-L-tryptophan oxidase Yersinia pestis
B2K770 2.6e-08 59 24 11 263 3 solA N-methyl-L-tryptophan oxidase Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q1C6L1 2.6e-08 59 24 11 263 3 solA N-methyl-L-tryptophan oxidase Yersinia pestis bv. Antiqua (strain Antiqua)
A7FH13 2.6e-08 59 24 11 263 3 solA N-methyl-L-tryptophan oxidase Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
P40873 4.48e-08 58 23 11 272 1 soxA Monomeric sarcosine oxidase Arthrobacter sp. (strain TE1826)
Q9DBT9 5.73e-08 58 19 12 458 1 Dmgdh Dimethylglycine dehydrogenase, mitochondrial Mus musculus
B4RR07 6.9e-08 58 22 17 472 3 dadA D-amino acid dehydrogenase Neisseria gonorrhoeae (strain NCCP11945)
Q5F5W1 6.9e-08 58 22 17 472 3 dadA D-amino acid dehydrogenase Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)
Q63342 1.15e-07 58 19 4 261 1 Dmgdh Dimethylglycine dehydrogenase, mitochondrial Rattus norvegicus
P40859 1.4e-07 57 21 7 308 1 soxA Monomeric sarcosine oxidase Bacillus sp. (strain B-0618)
Q1QXY5 2.88e-07 56 23 10 277 3 dadA D-amino acid dehydrogenase Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11)
Q52671 3.49e-07 55 21 17 446 3 soxB Sarcosine oxidase subunit beta Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
A9ADT7 8.03e-07 55 22 14 368 3 dadA D-amino acid dehydrogenase Burkholderia multivorans (strain ATCC 17616 / 249)
Q92XP5 1.5e-06 53 19 12 396 3 ooxB Opine oxidase subunit B Rhizobium meliloti (strain 1021)
Q2IZZ7 1.66e-06 53 20 5 273 3 dadA D-amino acid dehydrogenase Rhodopseudomonas palustris (strain HaA2)
Q2SY06 6.86e-06 52 22 18 479 3 dadA D-amino acid dehydrogenase Burkholderia thailandensis (strain ATCC 700388 / DSM 13276 / CCUG 48851 / CIP 106301 / E264)
B1YV52 1.03e-05 51 22 14 359 3 dadA D-amino acid dehydrogenase Burkholderia ambifaria (strain MC40-6)
A9IP97 1.17e-05 51 20 18 475 3 dadA D-amino acid dehydrogenase Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448)
Q9UI17 1.2e-05 51 21 9 314 1 DMGDH Dimethylglycine dehydrogenase, mitochondrial Homo sapiens
Q0BH74 1.25e-05 51 22 14 359 3 dadA D-amino acid dehydrogenase Burkholderia ambifaria (strain ATCC BAA-244 / DSM 16087 / CCUG 44356 / LMG 19182 / AMMD)
O31616 1.5e-05 50 23 4 210 1 thiO Glycine oxidase Bacillus subtilis (strain 168)
O46504 1.57e-05 51 25 10 240 1 PDPR Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial Bos taurus
A4JCJ3 1.92e-05 50 22 14 368 3 dadA D-amino acid dehydrogenase Burkholderia vietnamiensis (strain G4 / LMG 22486)
B4T2Z2 2.5e-05 50 23 10 286 3 solA N-methyl-L-tryptophan oxidase Salmonella newport (strain SL254)
P58739 2.74e-05 50 20 15 478 3 dadA D-amino acid dehydrogenase Agrobacterium fabrum (strain C58 / ATCC 33970)
B5F947 2.83e-05 50 23 10 286 3 solA N-methyl-L-tryptophan oxidase Salmonella agona (strain SL483)
P58525 3.35e-05 49 23 10 286 3 solA N-methyl-L-tryptophan oxidase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
B4TSS2 3.47e-05 49 23 10 286 3 solA N-methyl-L-tryptophan oxidase Salmonella schwarzengrund (strain CVM19633)
P44732 3.59e-05 49 23 7 219 4 ordL Probable oxidoreductase OrdL Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A9N5Q2 4.81e-05 49 23 10 286 3 solA N-methyl-L-tryptophan oxidase Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
A1B072 5.29e-05 49 26 3 157 3 dadA D-amino acid dehydrogenase Paracoccus denitrificans (strain Pd 1222)
B4TET2 5.35e-05 48 23 10 286 3 solA N-methyl-L-tryptophan oxidase Salmonella heidelberg (strain SL476)
Q9RAE6 6.46e-05 48 21 7 296 3 dadA D-amino acid dehydrogenase Rhizobium johnstonii (strain DSM 114642 / LMG 32736 / 3841)
Q3JQ00 9.12e-05 48 35 2 78 3 dadA D-amino acid dehydrogenase Burkholderia pseudomallei (strain 1710b)
A3NXU9 9.12e-05 48 35 2 78 3 dadA D-amino acid dehydrogenase Burkholderia pseudomallei (strain 1106a)
P58524 0.000115 48 23 10 286 3 solA N-methyl-L-tryptophan oxidase Salmonella typhi
A1V8X2 0.000137 48 31 4 113 3 mnmC tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC Burkholderia mallei (strain SAVP1)
B9JI94 0.000137 47 25 3 157 3 dadA D-amino acid dehydrogenase Rhizobium rhizogenes (strain K84 / ATCC BAA-868)
Q63Z34 0.000142 48 31 4 113 3 mnmC tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC Burkholderia pseudomallei (strain K96243)
A3NPL7 0.000142 48 31 4 113 3 mnmC tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC Burkholderia pseudomallei (strain 1106a)
Q62FV6 0.000142 48 31 4 113 3 mnmC tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC Burkholderia mallei (strain ATCC 23344)
A2S6N9 0.000142 48 31 4 113 3 mnmC tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC Burkholderia mallei (strain NCTC 10229)
A3MQF7 0.000142 48 31 4 113 3 mnmC tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC Burkholderia mallei (strain NCTC 10247)
Q3JXS0 0.000143 48 31 4 113 3 mnmC tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC Burkholderia pseudomallei (strain 1710b)
P55655 0.000152 46 40 2 66 3 NGR_a01610 Uncharacterized oxidoreductase y4sL Sinorhizobium fredii (strain NBRC 101917 / NGR234)
B2T612 0.000154 47 20 12 368 3 dadA D-amino acid dehydrogenase Paraburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN)
Q63S25 0.00016 47 21 18 478 3 dadA D-amino acid dehydrogenase Burkholderia pseudomallei (strain K96243)
Q13VE3 0.00021 47 21 11 362 3 dadA D-amino acid dehydrogenase Paraburkholderia xenovorans (strain LB400)
A3NC12 0.0003 47 34 2 78 3 dadA D-amino acid dehydrogenase Burkholderia pseudomallei (strain 668)
A1V6K0 0.0003 47 34 2 78 3 dadA D-amino acid dehydrogenase Burkholderia mallei (strain SAVP1)
Q62M46 0.0003 47 34 2 78 3 dadA D-amino acid dehydrogenase Burkholderia mallei (strain ATCC 23344)
A2S4P8 0.0003 47 34 2 78 3 dadA D-amino acid dehydrogenase Burkholderia mallei (strain NCTC 10229)
A3MHR1 0.0003 47 34 2 78 3 dadA D-amino acid dehydrogenase Burkholderia mallei (strain NCTC 10247)
Q7N3Z6 0.000343 46 31 3 97 3 dadA D-amino acid dehydrogenase Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
Q7TSQ8 0.000424 46 23 8 221 1 Pdpr Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial Mus musculus
P26484 0.000465 46 25 3 127 3 fixC Protein FixC Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / LMG 6465 / NBRC 14845 / NCIMB 13405 / ORS 571)
Q89T28 0.000699 45 21 9 298 3 dadA D-amino acid dehydrogenase Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
A6WYV7 0.000744 45 19 6 275 3 dadA D-amino acid dehydrogenase Brucella anthropi (strain ATCC 49188 / DSM 6882 / CCUG 24695 / JCM 21032 / LMG 3331 / NBRC 15819 / NCTC 12168 / Alc 37)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS10590
Feature type CDS
Gene -
Product FAD-dependent oxidoreductase
Location 2329142 - 2330557 (strand: -1)
Length 1416 (nucleotides) / 471 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_149
Orthogroup size 10
N. genomes 7

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Genomic region

Domains

PF01266 FAD dependent oxidoreductase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0665 Amino acid transport and metabolism (E) E Glycine/D-amino acid oxidase (deaminating)

Protein Sequence

MAISRRKFILGGTVVAVAAGAGILTPMLTREGRFVPGTPRHGFVEGTGGPLPKQDDVVVIGAGILGIMTAINLAERGLSVTIVEKGNIAGEQSSRFYGQAISYKMPDETFLLHHLGKHRWREMNAKVGIDTTYRTQGRVEVPLDEEDLENVRKWIDAKSKDVGSDIPFRTKMIEGAELKQRLRGATTDWKIAGFEEDSGSFDPEVATFVMAEYAKKMGIKIFTNCAARGLETQAGVISDVVTEKGPIKTSRVVVAGGVWSRLFMQNLNVDVPTLPAYQSQQLISAAPNAPGGNVALPGGIFFREQADGTYATSPRVIVAPVVKESFTYGYKYLPLLALPDFPVHISLNEQLINSFMQSTHWDLNEESPFEKYRDMTALPDLPELNASLEKLKKEFPAFKESTLIDQWSGAMAIAPDENPIISDVKEYPGLVINTATGWGMTESPVSAEITADLLLGKKPVLDAKPFSLYRF

Flanking regions ( +/- flanking 50bp)

CGTGATTATATAATGATAATTATTCACTGCATGAAAGGAATTGTTTCGAAATGGCAATAAGTAGAAGAAAATTTATTCTTGGTGGCACAGTGGTTGCTGTTGCTGCAGGCGCTGGGATTTTAACACCTATGTTAACGCGAGAAGGGCGTTTTGTTCCTGGTACGCCGAGACATGGTTTTGTTGAGGGAACTGGCGGTCCATTACCGAAACAAGATGATGTTGTTGTAATTGGTGCGGGTATTTTAGGTATCATGACCGCGATTAACCTTGCTGAGCGTGGCTTATCTGTCACAATCGTTGAAAAAGGAAATATTGCCGGCGAACAATCATCTCGATTCTATGGTCAAGCTATTAGCTATAAAATGCCAGATGAAACCTTCTTATTACATCACCTCGGGAAGCACCGCTGGCGTGAAATGAACGCTAAAGTTGGTATTGATACCACTTATCGTACACAAGGTCGTGTAGAAGTTCCTTTAGATGAAGAAGATTTAGAAAACGTAAGAAAATGGATTGATGCTAAAAGCAAAGATGTTGGCTCAGACATTCCATTTAGAACAAAAATGATTGAAGGCGCTGAGTTAAAACAGCGTTTACGTGGCGCTACCACTGATTGGAAAATTGCTGGTTTCGAAGAAGACTCAGGAAGCTTCGATCCTGAAGTTGCGACTTTTGTGATGGCAGAATATGCCAAAAAAATGGGTATCAAAATTTTCACAAACTGTGCAGCCCGTGGTTTAGAAACGCAAGCTGGTGTTATTTCTGATGTTGTAACAGAAAAAGGACCAATTAAAACCTCTCGTGTTGTTGTCGCCGGTGGTGTTTGGTCACGTTTATTTATGCAGAACCTAAATGTTGATGTACCAACATTACCTGCTTATCAATCACAGCAATTAATTAGCGCAGCACCAAATGCGCCAGGTGGAAACGTTGCTTTACCCGGCGGAATTTTCTTCCGTGAGCAAGCGGATGGAACGTATGCAACTTCTCCTCGTGTCATTGTTGCTCCGGTAGTAAAAGAATCATTTACTTACGGCTATAAATATTTACCTCTGCTGGCTTTACCTGATTTCCCAGTACATATTTCGTTAAATGAGCAGTTGATTAATTCCTTTATGCAATCAACACATTGGGATCTTAATGAAGAGTCGCCATTTGAAAAATATCGTGATATGACCGCTCTGCCTGATCTGCCAGAATTAAATGCCTCACTGGAAAAACTGAAAAAAGAGTTCCCAGCATTTAAAGAATCAACGTTAATTGATCAGTGGAGTGGTGCGATGGCGATTGCACCAGATGAAAACCCAATTATCTCTGATGTTAAAGAGTATCCAGGTCTAGTTATTAATACTGCAACAGGTTGGGGAATGACAGAAAGCCCTGTATCAGCAGAAATTACAGCAGATTTATTATTAGGCAAAAAACCTGTATTAGATGCCAAACCATTTAGTCTGTATCGTTTCTAACTCTTTTTTTTGATAAGAAATGAAAGCCCTCTAATAAACCGCACTGTTAT