Homologs in group_167

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02620 FBDBKF_02620 24.4 Morganella morganii S1 dadA Glycine/D-amino acid oxidase (deaminating)
EHELCC_03090 EHELCC_03090 24.4 Morganella morganii S2 dadA Glycine/D-amino acid oxidase (deaminating)
NLDBIP_00370 NLDBIP_00370 24.4 Morganella morganii S4 dadA Glycine/D-amino acid oxidase (deaminating)
LHKJJB_01665 LHKJJB_01665 24.4 Morganella morganii S3 dadA Glycine/D-amino acid oxidase (deaminating)
HKOGLL_01705 HKOGLL_01705 24.4 Morganella morganii S5 dadA Glycine/D-amino acid oxidase (deaminating)
F4V73_RS05080 F4V73_RS05080 24.2 Morganella psychrotolerans - FAD-binding oxidoreductase
PMI_RS10590 PMI_RS10590 22.2 Proteus mirabilis HI4320 - FAD-dependent oxidoreductase
PMI_RS14000 PMI_RS14000 24.8 Proteus mirabilis HI4320 - FAD-dependent oxidoreductase

Distribution of the homologs in the orthogroup group_167

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_167

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P40859 1.46e-07 56 26 8 213 1 soxA Monomeric sarcosine oxidase Bacillus sp. (strain B-0618)
A0A0R3K2G2 9.63e-07 54 23 11 325 1 lhgO_1 Glycerol 3-phosphate dehydrogenase Caloramator mitchellensis
P40873 2.51e-06 52 26 12 256 1 soxA Monomeric sarcosine oxidase Arthrobacter sp. (strain TE1826)
P23342 8.17e-06 51 26 12 256 1 soxA Monomeric sarcosine oxidase Bacillus sp. (strain NS-129)
B2HYP8 0.000324 46 64 0 37 3 mnmC tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC Acinetobacter baumannii (strain ACICU)
A3M8T4 0.000392 46 64 0 37 3 mnmC tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC Acinetobacter baumannii (strain ATCC 17978 / DSM 105126 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS15210
Feature type CDS
Gene -
Product TIGR03364 family FAD-dependent oxidoreductase
Location 3376194 - 3377321 (strand: 1)
Length 1128 (nucleotides) / 375 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_167
Orthogroup size 9
N. genomes 7

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Genomic region

Domains

PF01266 FAD dependent oxidoreductase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0665 Amino acid transport and metabolism (E) E Glycine/D-amino acid oxidase (deaminating)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K27877 2-(methylaminoethyl)phosphonate oxidase [EC:1.5.3.27] Phosphonate and phosphinate metabolism
Metabolic pathways
Microbial metabolism in diverse environments		 -

Protein Sequence

MKFDIAVIGAGIIGLSHAYAAAQRGLRVAIFERSYTPVGASVRNFGHGLILGQAPGKMLDLAKNSREIWATMAKQAKFLTRQKGTYLLARTQSEQAVLEAFVDGRAKTYGYDCELLSKTQLATVYGGQLQHHKAALHGKEDQVLFSREAIPQLAAYLGSLANVTSYFSTLVRDIDVDTGTLITSNGTFSAEKIIVCSGHDYQTLLADEIKKLDPIVCRLQMLRVTAEQNIGLAHALMTGLSCTHYGAFADLPEAQALAKEIKMQSPLIEQYGIHLLITPTPYGDLIIGDSHEYSLDAQPFNSEEVDNLLIELAEHTLGCSVQVKERWQGVYGAKGKEPISILTPSEKVTAVLMRTGLGMSVGPGLGEQNIRQLFD

Flanking regions ( +/- flanking 50bp)

ATTAATTAATAGATAGGGTGCGATGCACTCTATCTGGTTTAGGGTGTCATATGAAATTTGATATTGCGGTTATTGGTGCGGGCATTATTGGTTTATCTCATGCATATGCAGCGGCTCAGCGAGGTTTACGTGTTGCTATTTTTGAGCGCAGTTACACGCCTGTGGGCGCTTCTGTACGTAATTTTGGTCACGGATTAATTTTGGGTCAAGCGCCGGGAAAAATGCTAGATTTAGCAAAAAATAGTCGTGAAATTTGGGCAACTATGGCCAAACAGGCTAAATTTTTAACGCGTCAAAAAGGGACTTATCTATTAGCACGTACACAATCTGAGCAAGCTGTTCTTGAAGCCTTTGTCGATGGTCGAGCTAAAACCTATGGCTATGATTGTGAATTACTTTCTAAAACACAATTAGCGACGGTTTATGGTGGTCAATTACAACACCATAAAGCGGCGTTGCATGGCAAAGAAGATCAGGTGCTATTTTCGCGAGAAGCGATCCCACAGTTAGCGGCTTATCTAGGCAGCTTAGCTAATGTAACGAGTTATTTTTCCACATTAGTACGGGATATTGATGTAGATACGGGGACATTGATCACCAGTAATGGAACATTTAGTGCAGAAAAGATCATTGTCTGCTCAGGGCACGATTATCAAACATTATTGGCTGACGAAATAAAAAAGCTTGATCCTATAGTTTGCCGCCTGCAGATGTTGCGAGTGACAGCAGAGCAAAATATTGGATTGGCGCATGCGCTAATGACGGGATTAAGTTGTACTCACTATGGTGCATTTGCTGATTTACCTGAGGCACAGGCTTTAGCGAAAGAAATTAAAATGCAATCGCCGTTGATTGAGCAGTATGGTATTCATTTATTAATTACCCCGACTCCTTATGGCGATCTTATTATTGGTGATTCTCATGAATATAGCTTAGATGCACAGCCTTTTAACAGCGAAGAGGTTGATAACCTCCTGATAGAGTTAGCTGAGCACACATTAGGTTGTTCGGTTCAAGTAAAAGAGCGTTGGCAAGGGGTTTATGGGGCAAAAGGAAAGGAGCCGATTTCAATTTTAACGCCGAGTGAAAAAGTCACTGCAGTATTGATGCGAACGGGTTTAGGAATGAGTGTTGGGCCTGGTTTAGGTGAACAAAATATTCGTCAACTATTTGATTAATCTTGCATTAGGGATGTGAAGTTATTTTTTAATTATCCAAAGCACCGTAA