COG0665


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0665, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 16 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Glycine/D-amino acid oxidase (deaminating)
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG0665 is associated with 16 different proteins (see tab "Protein list" and "Profile")
The 16 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_149 FBDBKF_02620 222170 223594 -1 dadA Glycine/D-amino acid oxidase (deaminating) Morganella morganii S1
1 group_988 FBDBKF_05465 103061 104359 -1 dadA Glycine/D-amino acid oxidase (deaminating) Morganella morganii S1
2 group_149 EHELCC_03090 609990 611414 -1 dadA Glycine/D-amino acid oxidase (deaminating) Morganella morganii S2
3 group_988 EHELCC_12125 77135 78433 1 dadA Glycine/D-amino acid oxidase (deaminating) Morganella morganii S2
4 group_149 NLDBIP_00370 68722 70146 1 dadA Glycine/D-amino acid oxidase (deaminating) Morganella morganii S4
5 group_988 NLDBIP_12465 77090 78388 1 dadA Glycine/D-amino acid oxidase (deaminating) Morganella morganii S4
6 group_149 LHKJJB_01665 322539 323963 -1 dadA Glycine/D-amino acid oxidase (deaminating) Morganella morganii S3
7 group_988 LHKJJB_12325 77135 78433 1 dadA Glycine/D-amino acid oxidase (deaminating) Morganella morganii S3
8 group_149 HKOGLL_01705 328050 329474 -1 dadA Glycine/D-amino acid oxidase (deaminating) Morganella morganii S5
9 group_988 HKOGLL_10940 77135 78433 1 dadA Glycine/D-amino acid oxidase (deaminating) Morganella morganii S5
10 group_988 F4V73_RS03830 810453 811751 1 D-amino acid dehydrogenase Morganella psychrotolerans
11 group_149 F4V73_RS05080 1082251 1083675 -1 FAD-binding oxidoreductase Morganella psychrotolerans
12 group_988 PMI_RS07315 1602359 1603663 -1 D-amino acid dehydrogenase Proteus mirabilis HI4320
13 group_149 PMI_RS10590 2329142 2330557 -1 FAD-dependent oxidoreductase Proteus mirabilis HI4320
14 group_149 PMI_RS14000 3107558 3108979 -1 FAD-dependent oxidoreductase Proteus mirabilis HI4320
15 group_149 PMI_RS15210 3376194 3377321 1 TIGR03364 family FAD-dependent oxidoreductase Proteus mirabilis HI4320