Homologs in group_1873

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13605 FBDBKF_13605 57.2 Morganella morganii S1 gcvR Glycine cleavage system regulator GcvR
EHELCC_08490 EHELCC_08490 57.2 Morganella morganii S2 gcvR Glycine cleavage system regulator GcvR
NLDBIP_08815 NLDBIP_08815 57.2 Morganella morganii S4 gcvR Glycine cleavage system regulator GcvR
LHKJJB_05450 LHKJJB_05450 57.2 Morganella morganii S3 gcvR Glycine cleavage system regulator GcvR
HKOGLL_05465 HKOGLL_05465 57.2 Morganella morganii S5 gcvR Glycine cleavage system regulator GcvR
F4V73_RS03160 F4V73_RS03160 54.4 Morganella psychrotolerans - ACT domain-containing protein

Distribution of the homologs in the orthogroup group_1873

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1873

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A9I4 3.24e-75 226 59 0 179 3 gcvR Glycine cleavage system transcriptional repressor Shigella flexneri
P0A9I3 3.24e-75 226 59 0 179 1 gcvR Glycine cleavage system transcriptional repressor Escherichia coli (strain K12)
Q6LZH1 0.000103 42 41 0 46 3 MMP0657 UPF0237 protein MMP0657 Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS07625
Feature type CDS
Gene -
Product glycine cleavage system transcriptional repressor
Location 1663243 - 1663800 (strand: 1)
Length 558 (nucleotides) / 185 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1873
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13740 ACT domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2716 Amino acid transport and metabolism (E) E Glycine cleavage system regulator GcvR

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03567 glycine cleavage system transcriptional repressor Biofilm formation - Escherichia coli -

Protein Sequence

MPIPDKHFLVLTALGTDRPGIVDTITQLVSQCGCNIEDSRLAMFGQEFTFIMLLSGGWNAIAQLEALLPIKSAELDLLTVMKRTKMGAPVSYPSTITAKVDIEDAPGIVERFTNLFSQHHFNLAELVSKTHPSEDGTPARLEIQITAHNPLDDHGLVIHEKFNQLCTELNAQGTISIVNSLMMKQ

Flanking regions ( +/- flanking 50bp)

TTTTGTGTTTACCTGTTAGGAATAAACTGAAAGTCAAAAGGAAGCCTATTTTGCCTATACCTGATAAACATTTTCTCGTACTCACTGCATTAGGGACTGACCGTCCTGGTATCGTTGATACCATTACGCAATTAGTTAGCCAATGCGGGTGTAATATCGAAGACAGCCGGCTTGCGATGTTCGGTCAAGAATTTACGTTTATCATGCTACTTTCTGGTGGTTGGAATGCGATTGCCCAACTTGAAGCATTACTGCCGATAAAAAGTGCAGAACTTGATTTATTGACTGTGATGAAAAGAACCAAAATGGGTGCGCCAGTCTCTTACCCATCAACCATTACTGCAAAAGTAGATATAGAAGATGCCCCCGGCATTGTTGAACGTTTTACCAATTTATTTAGTCAACATCACTTTAATCTTGCAGAATTAGTTTCTAAAACCCATCCTTCTGAGGATGGTACTCCTGCTCGTTTAGAAATTCAGATCACGGCCCATAATCCGCTAGATGATCATGGTCTCGTTATTCATGAGAAATTCAATCAATTATGTACAGAGTTAAACGCTCAAGGCACAATAAGTATCGTAAATAGTCTGATGATGAAACAATAAAAGAATGGAGAATTAGGTAATGAACCCATTAAAAGCCGGTGATAAGGCAC