Homologs in group_1835

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13605 FBDBKF_13605 86.1 Morganella morganii S1 gcvR Glycine cleavage system regulator GcvR
EHELCC_08490 EHELCC_08490 86.1 Morganella morganii S2 gcvR Glycine cleavage system regulator GcvR
NLDBIP_08815 NLDBIP_08815 86.1 Morganella morganii S4 gcvR Glycine cleavage system regulator GcvR
LHKJJB_05450 LHKJJB_05450 86.1 Morganella morganii S3 gcvR Glycine cleavage system regulator GcvR
HKOGLL_05465 HKOGLL_05465 86.1 Morganella morganii S5 gcvR Glycine cleavage system regulator GcvR
PMI_RS07625 PMI_RS07625 54.4 Proteus mirabilis HI4320 - glycine cleavage system transcriptional repressor

Distribution of the homologs in the orthogroup group_1835

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1835

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A9I4 1.14e-64 199 54 0 175 3 gcvR Glycine cleavage system transcriptional repressor Shigella flexneri
P0A9I3 1.14e-64 199 54 0 175 1 gcvR Glycine cleavage system transcriptional repressor Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS03160
Feature type CDS
Gene -
Product ACT domain-containing protein
Location 674358 - 674900 (strand: -1)
Length 543 (nucleotides) / 180 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1835
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13740 ACT domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2716 Amino acid transport and metabolism (E) E Glycine cleavage system regulator GcvR

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03567 glycine cleavage system transcriptional repressor Biofilm formation - Escherichia coli -

Protein Sequence

MPQHDQQYLVITALGRDRAGIVNAITRHAGQCDCNIEDSRLAIFGEEFTFIMMLSGSWNAVAMLESTLPVLAAELDLLTVMKRTQRGHQPTATTGVSARITVADAAGLVERFTNLFMKLDYTLAELVSKTRPDDNSTSALLEIQITAHHPTGENTDILQHQFTCLCAELQAEGNVTLISH

Flanking regions ( +/- flanking 50bp)

ATCTTTCTTTATGTTTAACACATTCATGATGTCAGAAGAGGAATGTGGGTTTGCCGCAACACGATCAGCAATATCTGGTTATCACAGCTCTGGGACGGGATCGCGCGGGGATTGTTAATGCAATTACCCGCCATGCCGGACAGTGTGACTGTAATATCGAAGACAGCCGCCTGGCGATTTTTGGTGAGGAATTTACCTTTATCATGATGCTGTCCGGCAGTTGGAATGCCGTAGCCATGCTGGAGTCCACCCTTCCTGTGCTGGCAGCAGAGTTAGATCTGCTGACAGTGATGAAGCGGACTCAGCGCGGACACCAGCCGACAGCAACCACCGGCGTCAGCGCCCGGATAACAGTGGCGGATGCGGCAGGACTGGTCGAACGGTTTACCAATTTATTTATGAAACTGGATTACACCCTGGCCGAGCTGGTGTCAAAAACCCGGCCGGATGATAACAGCACGTCCGCCCTGCTGGAAATTCAGATTACTGCCCATCACCCTACGGGTGAAAACACGGATATATTGCAACATCAATTTACCTGTCTTTGTGCTGAATTACAGGCCGAAGGCAATGTTACCCTGATAAGTCATTAATTCTTATATTTATAATTACGTTTACGGAGAGTATGTAATGAGCCCATTGA