Homologs in group_1873

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13605 FBDBKF_13605 100.0 Morganella morganii S1 gcvR Glycine cleavage system regulator GcvR
EHELCC_08490 EHELCC_08490 100.0 Morganella morganii S2 gcvR Glycine cleavage system regulator GcvR
NLDBIP_08815 NLDBIP_08815 100.0 Morganella morganii S4 gcvR Glycine cleavage system regulator GcvR
LHKJJB_05450 LHKJJB_05450 100.0 Morganella morganii S3 gcvR Glycine cleavage system regulator GcvR
F4V73_RS03160 F4V73_RS03160 86.1 Morganella psychrotolerans - ACT domain-containing protein
PMI_RS07625 PMI_RS07625 57.2 Proteus mirabilis HI4320 - glycine cleavage system transcriptional repressor

Distribution of the homologs in the orthogroup group_1873

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1873

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A9I4 1.35e-65 202 56 0 180 3 gcvR Glycine cleavage system transcriptional repressor Shigella flexneri
P0A9I3 1.35e-65 202 56 0 180 1 gcvR Glycine cleavage system transcriptional repressor Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_05465
Feature type CDS
Gene gcvR
Product Glycine cleavage system regulator GcvR
Location 160088 - 160630 (strand: -1)
Length 543 (nucleotides) / 180 (amino acids)
In genomic island -

Contig

Accession ZDB_682
Length 259781 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1873
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF13740 ACT domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2716 Amino acid transport and metabolism (E) E Glycine cleavage system regulator GcvR

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03567 glycine cleavage system transcriptional repressor Biofilm formation - Escherichia coli -

Protein Sequence

MPQRDQQYLVITALGRDRAGIVNAITRHAGECDCNIEDSRLAIFGEEFTFIMMLSGSWNAIAMLEATLPVLAAELDLLTVMKRTQRGHQPAATTGVSAQVTVPDAAGLVERFTNLFMRLDYTLAELVSKTRPEDDTDAVLLEIQITAHHPTGENNAVLQQQFYRLCAELQAEGTITLMNH

Flanking regions ( +/- flanking 50bp)

TCTTTCTTTATGTTTAACACATTCACGGTGTCATGAAGAGGAATGAGGGTTTGCCGCAACGCGATCAGCAATATCTGGTTATCACTGCACTGGGACGGGATCGCGCAGGGATTGTGAATGCGATTACCCGTCATGCCGGAGAGTGTGACTGTAATATCGAAGATAGCCGTCTGGCGATTTTCGGTGAGGAGTTCACGTTTATTATGATGCTGTCAGGCAGCTGGAATGCCATTGCCATGCTGGAGGCCACCCTGCCGGTACTGGCGGCGGAACTTGACCTGCTGACGGTCATGAAACGGACACAGCGCGGGCATCAGCCTGCGGCCACTACCGGTGTCAGTGCGCAGGTCACCGTGCCTGATGCCGCCGGGCTGGTGGAACGCTTTACCAATCTGTTTATGAGACTGGATTACACCCTGGCTGAACTGGTGTCCAAAACCCGGCCGGAGGATGATACAGACGCAGTACTGCTGGAGATTCAGATCACCGCGCATCACCCGACAGGGGAAAACAACGCGGTGCTGCAGCAGCAGTTTTACCGTCTTTGTGCTGAGTTACAGGCCGAAGGCACTATTACCCTGATGAATCATTAATGTTTGTGTTTATTATTACGTTTACGGAGAGTGTGTAATGAGCCCATTGA