Homologs in group_1827

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13530 FBDBKF_13530 63.1 Morganella morganii S1 ldcB LD-carboxypeptidase LdcB, LAS superfamily
EHELCC_08565 EHELCC_08565 63.1 Morganella morganii S2 ldcB LD-carboxypeptidase LdcB, LAS superfamily
NLDBIP_08890 NLDBIP_08890 63.1 Morganella morganii S4 ldcB LD-carboxypeptidase LdcB, LAS superfamily
LHKJJB_05375 LHKJJB_05375 63.1 Morganella morganii S3 ldcB LD-carboxypeptidase LdcB, LAS superfamily
HKOGLL_05540 HKOGLL_05540 63.1 Morganella morganii S5 ldcB LD-carboxypeptidase LdcB, LAS superfamily
F4V73_RS03230 F4V73_RS03230 66.7 Morganella psychrotolerans - M15 family metallopeptidase

Distribution of the homologs in the orthogroup group_1827

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1827

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P43941 9.87e-39 133 52 1 123 4 HI_0100 Uncharacterized protein HI_0100 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P43942 7.86e-31 113 56 1 103 4 HI_0101 Uncharacterized protein HI_0101 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS07580
Feature type CDS
Gene -
Product M15 family metallopeptidase
Location 1655131 - 1655799 (strand: 1)
Length 669 (nucleotides) / 222 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1827
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02557 D-alanyl-D-alanine carboxypeptidase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1876 Cell wall/membrane/envelope biogenesis (M) M LD-carboxypeptidase LdcB, LAS superfamily

Kegg Ortholog Annotation(s)

Protein Sequence

MITPLMLTGRSTDHLVTLSERHHLQFNATKAFLALQQQAAKAGFKLMPASSFRSFERQLAIWNGKFEGTRPVLDAESQPIDIQTLSEGQRCEAILKWSALPGASRHHWGTEIDFYDPFRLPNGQSLQLEPWEYEQGGYFAQLNDWLTENMSAYDFYRPFTDKESYIAYEPWHISYLPLSYEASQAYTIDILRAVLEEEPILGKQWLLDNLETVYQRYIVLPE

Flanking regions ( +/- flanking 50bp)

TTACAACAACTTAGTCGCATCTATCAGCGGATCATGGAGCAGATTATTTTATGATAACCCCTTTAATGTTAACGGGTCGTTCTACGGATCATTTAGTGACTTTATCAGAACGACATCATTTACAGTTTAACGCGACAAAAGCCTTTTTAGCGTTACAACAGCAAGCGGCCAAAGCGGGATTTAAATTAATGCCTGCCAGTTCATTTAGAAGTTTTGAACGTCAGTTAGCGATATGGAATGGCAAATTTGAAGGCACTCGCCCTGTATTAGATGCTGAAAGTCAACCTATTGATATTCAGACATTATCAGAAGGCCAACGCTGTGAGGCGATTTTAAAATGGTCTGCATTACCCGGAGCAAGTCGCCATCATTGGGGCACCGAAATTGATTTTTACGATCCTTTCCGTTTACCTAATGGGCAATCATTGCAATTAGAACCTTGGGAGTATGAACAAGGGGGCTATTTTGCACAACTTAATGACTGGCTGACTGAAAATATGTCAGCTTACGATTTTTATCGCCCTTTTACCGATAAAGAGAGTTATATTGCCTATGAGCCTTGGCATATCAGTTATTTGCCTCTCTCTTATGAAGCTTCACAGGCCTATACTATCGATATCCTTCGCGCTGTTTTAGAAGAAGAGCCGATTTTAGGTAAACAATGGCTATTAGATAACTTAGAAACGGTTTATCAACGCTATATTGTGCTACCAGAATAATTAGATTTTATTTATCTTAGGAGACATCTTGTTTATCTATTACAGGAAGT