COG1876


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1876, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description LD-carboxypeptidase LdcB, LAS superfamily
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG1876 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1827 FBDBKF_13530 83628 84305 1 ldcB LD-carboxypeptidase LdcB, LAS superfamily Morganella morganii S1
1 group_1827 EHELCC_08565 190886 191563 -1 ldcB LD-carboxypeptidase LdcB, LAS superfamily Morganella morganii S2
2 group_1827 NLDBIP_08890 190886 191563 -1 ldcB LD-carboxypeptidase LdcB, LAS superfamily Morganella morganii S4
3 group_1827 LHKJJB_05375 65596 66273 1 ldcB LD-carboxypeptidase LdcB, LAS superfamily Morganella morganii S3
4 group_1827 HKOGLL_05540 175477 176154 -1 ldcB LD-carboxypeptidase LdcB, LAS superfamily Morganella morganii S5
5 group_1827 F4V73_RS03230 689536 690222 -1 M15 family metallopeptidase Morganella psychrotolerans
6 group_1827 PMI_RS07580 1655131 1655799 1 M15 family metallopeptidase Proteus mirabilis HI4320