Homologs in group_1865

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13530 FBDBKF_13530 100.0 Morganella morganii S1 ldcB LD-carboxypeptidase LdcB, LAS superfamily
EHELCC_08565 EHELCC_08565 100.0 Morganella morganii S2 ldcB LD-carboxypeptidase LdcB, LAS superfamily
LHKJJB_05375 LHKJJB_05375 100.0 Morganella morganii S3 ldcB LD-carboxypeptidase LdcB, LAS superfamily
HKOGLL_05540 HKOGLL_05540 100.0 Morganella morganii S5 ldcB LD-carboxypeptidase LdcB, LAS superfamily
F4V73_RS03230 F4V73_RS03230 88.0 Morganella psychrotolerans - M15 family metallopeptidase
PMI_RS07580 PMI_RS07580 63.1 Proteus mirabilis HI4320 - M15 family metallopeptidase

Distribution of the homologs in the orthogroup group_1865

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1865

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P43941 6.6e-36 126 50 1 123 4 HI_0100 Uncharacterized protein HI_0100 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P43942 3.82e-31 114 52 1 103 4 HI_0101 Uncharacterized protein HI_0101 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O34866 0.000107 45 24 4 157 1 yodJ Putative carboxypeptidase YodJ Bacillus subtilis (strain 168)
Q47746 0.000832 43 26 4 164 1 vanYB D-alanyl-D-alanine carboxypeptidase Enterococcus faecalis (strain ATCC 700802 / V583)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_08890
Feature type CDS
Gene ldcB
Product LD-carboxypeptidase LdcB, LAS superfamily
Location 190886 - 191563 (strand: -1)
Length 678 (nucleotides) / 225 (amino acids)
In genomic island -

Contig

Accession ZDB_523
Length 257158 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1865
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02557 D-alanyl-D-alanine carboxypeptidase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1876 Cell wall/membrane/envelope biogenesis (M) M LD-carboxypeptidase LdcB, LAS superfamily

Kegg Ortholog Annotation(s)

Protein Sequence

MMTFEMLTGQTRDHVINFAGNHHLQFNVTKAFLAMQKAAATAGFKLMPASSFRDFSRQQIIWNEKFAGVRTVNDAENRPLDVSGLSEAERCQAILRWSAIPGASRHHWGTEVDYYDPFRLPADIALQLEPREYEEGGYFAALSAWLADNMAQFDFYLPFTQRQTGGVAYEPWHISYWPLSYEAEQLYTPETLERVLKTQDIAGKTWLLANLDAIYQQYVTLPESD

Flanking regions ( +/- flanking 50bp)

TTGCAGCAACTCAGCCGTATCTATCAACGGATTATGGAGCAGATACTGCTATGATGACCTTTGAAATGCTGACCGGGCAGACCCGTGATCATGTCATTAATTTTGCCGGTAATCATCACCTGCAATTTAATGTCACCAAAGCGTTTCTTGCCATGCAGAAAGCGGCGGCAACCGCCGGATTTAAACTGATGCCCGCCAGCTCCTTCCGCGATTTTTCCCGTCAGCAGATTATCTGGAATGAAAAATTTGCCGGGGTCCGCACTGTGAATGACGCAGAAAACCGCCCGCTGGATGTCTCAGGGCTGTCAGAGGCGGAGCGCTGTCAGGCGATTCTGCGCTGGTCTGCCATTCCGGGTGCCAGCCGTCATCACTGGGGAACAGAGGTCGATTATTACGATCCGTTCCGTCTGCCTGCTGATATTGCTCTTCAGCTTGAGCCCCGGGAATACGAGGAAGGCGGCTATTTTGCCGCCCTTTCCGCCTGGCTGGCGGATAATATGGCACAGTTTGATTTTTATCTGCCGTTCACACAGCGTCAGACCGGTGGTGTGGCTTATGAACCGTGGCATATCAGCTACTGGCCGCTCTCTTATGAAGCGGAGCAGCTTTACACCCCGGAAACGCTTGAAAGAGTACTGAAAACACAGGACATCGCCGGTAAAACATGGTTACTGGCTAATCTTGACGCAATTTATCAGCAATATGTCACATTACCGGAAAGCGATTAATCCGGTGATTTCTCCTCTGACGCCGGGGTATTCTCCGGCGTCATTTCATC