Homologs in group_1827

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13530 FBDBKF_13530 88.0 Morganella morganii S1 ldcB LD-carboxypeptidase LdcB, LAS superfamily
EHELCC_08565 EHELCC_08565 88.0 Morganella morganii S2 ldcB LD-carboxypeptidase LdcB, LAS superfamily
NLDBIP_08890 NLDBIP_08890 88.0 Morganella morganii S4 ldcB LD-carboxypeptidase LdcB, LAS superfamily
LHKJJB_05375 LHKJJB_05375 88.0 Morganella morganii S3 ldcB LD-carboxypeptidase LdcB, LAS superfamily
HKOGLL_05540 HKOGLL_05540 88.0 Morganella morganii S5 ldcB LD-carboxypeptidase LdcB, LAS superfamily
PMI_RS07580 PMI_RS07580 66.7 Proteus mirabilis HI4320 - M15 family metallopeptidase

Distribution of the homologs in the orthogroup group_1827

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1827

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P43941 8.24e-35 123 49 1 122 4 HI_0100 Uncharacterized protein HI_0100 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P43942 1.13e-31 116 55 1 103 4 HI_0101 Uncharacterized protein HI_0101 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q47746 5.98e-05 46 27 5 168 1 vanYB D-alanyl-D-alanine carboxypeptidase Enterococcus faecalis (strain ATCC 700802 / V583)
O34866 0.000318 44 24 5 157 1 yodJ Putative carboxypeptidase YodJ Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS03230
Feature type CDS
Gene -
Product M15 family metallopeptidase
Location 689536 - 690222 (strand: -1)
Length 687 (nucleotides) / 228 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1827
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02557 D-alanyl-D-alanine carboxypeptidase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1876 Cell wall/membrane/envelope biogenesis (M) M LD-carboxypeptidase LdcB, LAS superfamily

Kegg Ortholog Annotation(s)

Protein Sequence

MMTFEMLTGQTRDHVINFAGNHHLQFNATKAFLAMQKAAAGAGFKLMPASSFRDFARQQSIWNEKFAGTRTVNDADNRPLDVSVLSEAQRCQAILRWSALPGASRHHWGTEVDYYDPFRLPADTSLQLEPWEYEEGGYFATLSAWLTENMAQFDFYLPFTQKKTGGVAYEPWHISYWPLSYEAEQLYTVDTLEQVLNTQEIAGKTWLLANLDSIYQHYVRLPGSSAGK

Flanking regions ( +/- flanking 50bp)

TTGCAGCAACTCAGCCGTATCTATCAGCGCATTATGGAGCAGATTTTACTATGATGACCTTTGAGATGCTGACCGGGCAGACGCGTGACCATGTGATTAATTTTGCCGGTAATCATCACCTGCAATTCAATGCCACCAAAGCGTTTCTGGCAATGCAGAAAGCCGCCGCCGGAGCGGGATTTAAACTGATGCCTGCCAGTTCGTTCCGTGATTTTGCGCGCCAGCAGAGTATCTGGAATGAGAAATTTGCCGGAACCCGCACTGTAAATGATGCGGATAACCGCCCGCTGGATGTATCTGTGCTGTCAGAAGCGCAGCGCTGTCAGGCAATTCTGCGCTGGTCTGCCCTGCCGGGCGCCAGCCGCCATCACTGGGGAACGGAGGTGGATTATTACGATCCGTTCCGCCTGCCTGCTGACACATCGCTGCAACTTGAGCCTTGGGAATACGAGGAAGGCGGCTATTTTGCGACACTGTCTGCCTGGTTAACAGAGAATATGGCGCAGTTTGATTTTTATCTGCCGTTCACACAGAAAAAAACAGGTGGCGTGGCGTATGAGCCCTGGCATATCAGCTACTGGCCGCTCTCATATGAAGCGGAGCAACTTTATACTGTAGATACACTGGAACAGGTGCTGAACACGCAGGAGATTGCAGGGAAAACCTGGCTTCTGGCAAACCTGGACAGTATTTATCAGCACTATGTCCGCCTGCCGGGTTCGTCTGCCGGAAAATAGTTAATCTTCCGGTTTCCCCGGTTTTTCCTCTGATGCCGCCGGGTTCTGTG