Homologs in group_1968

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14760 FBDBKF_14760 66.1 Morganella morganii S1 rne ribonuclease E
EHELCC_15565 EHELCC_15565 66.1 Morganella morganii S2 rne ribonuclease E
NLDBIP_16095 NLDBIP_16095 66.1 Morganella morganii S4 rne ribonuclease E
LHKJJB_15745 LHKJJB_15745 66.1 Morganella morganii S3 rne ribonuclease E
HKOGLL_14865 HKOGLL_14865 66.1 Morganella morganii S5 rne ribonuclease E
F4V73_RS07555 F4V73_RS07555 66.1 Morganella psychrotolerans rne ribonuclease E

Distribution of the homologs in the orthogroup group_1968

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1968

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P21513 0.0 1033 66 12 883 1 rne Ribonuclease E Escherichia coli (strain K12)
P21513 3.6e-05 52 46 1 56 1 rne Ribonuclease E Escherichia coli (strain K12)
P44443 0.0 872 72 8 606 3 rne Ribonuclease E Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8K9J9 0.0 848 72 0 540 3 rne Ribonuclease E Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57429 0.0 786 70 0 540 3 rne Ribonuclease E Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q89AH3 1.35e-179 535 60 0 402 3 rne Putative ribonuclease E Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q8YP69 5.34e-71 254 38 6 386 1 rne Ribonuclease E Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
A0R152 5.07e-69 255 38 9 389 1 rne Ribonuclease E Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
A0A0H3NGK0 1.85e-66 236 36 8 436 1 rng Ribonuclease G Salmonella typhimurium (strain SL1344)
P0A9J3 4.97e-66 235 35 8 436 3 rng Ribonuclease G Shigella flexneri
P0A9J0 4.97e-66 235 35 8 436 1 rng Ribonuclease G Escherichia coli (strain K12)
P0A9J1 4.97e-66 235 35 8 436 3 rng Ribonuclease G Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9J2 4.97e-66 235 35 8 436 3 rng Ribonuclease G Escherichia coli O157:H7
P71905 1.22e-64 241 36 10 393 1 rne Ribonuclease E Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P72656 1.59e-63 233 35 4 379 1 rne Ribonuclease E Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P45175 6.2e-63 226 34 7 455 3 rng Ribonuclease G Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P51211 1.38e-50 191 33 6 367 3 rne Ribonuclease E/G-like protein Porphyra purpurea
Q1XDS6 3.17e-49 186 31 5 366 3 rne Ribonuclease E/G-like protein Neopyropia yezoensis
F4IV66 1.97e-48 191 31 14 489 1 RNE Ribonuclease E/G-like protein, chloroplastic Arabidopsis thaliana
O78453 2.35e-19 95 27 15 376 3 rne Ribonuclease E/G-like protein Guillardia theta
Q9TL10 6.04e-05 50 34 1 114 3 rne Ribonuclease E/G-like protein Nephroselmis olivacea

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS04180
Feature type CDS
Gene rne
Product ribonuclease E
Location 941186 - 944707 (strand: -1)
Length 3522 (nucleotides) / 1173 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1968
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00575 S1 RNA binding domain
PF10150 Ribonuclease E/G family
PF12111 Polyribonucleotide phosphorylase C terminal
PF20833 RNase E/G, Thioredoxin-like domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1530 Translation, ribosomal structure and biogenesis (J) J Ribonuclease G or E

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K08300 ribonuclease E [EC:3.1.26.12] RNA degradation -

Protein Sequence

MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPIKEIAREYFPSNYHSHGRPNIKDVLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGEDRTELKEALSSLDIPDGMGLIVRTAGVGKSAEALQQDLSYRLRHWDAIKKAAESRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNAKVVEMARSHIEAIGRGDFASKIRHYTGAVPLFSHYQIESQIESAFQREVRLPSGGALVIDTTEALTAIDINSSRSTRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRMREAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCLGTGTIRDNESLSLSVLRLIEEEALKENTHEVHAIVPVQIASYLLNEKRKAVTDIELRQANVKVVIVPNDQMQTPHFSVIRVRKGEEISSLSYNLAQYHETQLNEAEDEAVPERKAPEQPAISAFALQDNSADTTNKKKSAPTPAKQVKKSETTESGGFFSAIAKFFSNLFASQPEPVVEEKPQESKKENNENRRERRNNNNRRNNNRRERDNDRNRDHERNRDNVTSEENRKNRNQKAQNANTEVSNEQEIAEREARRQQRREQRAEQRRRQEEKRQQQQEAAKAAQNTAENDNAAKQAEKKEEPRRPVMPRRARRQLTQSVRVTDAVATPAIDVAVSDSPVSEPPATVVSQLPSSEKQQVAKPVATVKDEQEQVSANALTDTVKAQEEVKKEENAGQQENVMPRRSRRSPRHLRVSGQRRRRYRDERTLVSPMPLTMAVASPELASGKVCIHYPVTPISDAPFVDNNVENSTDNTVAKNFITHKDPQMVAIAPEVSETIAADVAQAQTANTEATEATYSVTVSTESTTEAVAEIVAIAPQETTADVNESTADHVEENAVNNVIADVNTQEHVTRKENISAVLNTTEAYLHEVTEQADVAEEKTETTHNKVIANADHETASEDTHSDMTTQAPVPEMPATTQASTECAAEQHVEQTASQSTPVETQPEVTEPVAETKTETEVVSVEVKQPAKVTVIRQEPTVRQLHASSPMTKAPASTDAPVAIEIKAWDARPAFDKQGRSGAGGHCSTNHASSEMTKASTHSES

Flanking regions ( +/- flanking 50bp)

GTATGTCAGTGGCACATTATAAAACGTGAAAATAACGAGTAAGTCACAATATGAAAAGAATGTTAATTAACGCGACTCAACAGGAAGAGTTGCGTGTTGCCCTTGTTGATGGGCAACGTTTGTATGATCTGGATATCGAAAGCCCCGGACATGAGCAAAAAAAAGCCAATATCTATAAAGGTAAAATCACCCGAATTGAACCCAGTCTAGAAGCCGCTTTTGTTGATTATGGTGCGGAACGCCACGGTTTCCTTCCTATCAAAGAAATTGCCCGCGAATATTTCCCTAGTAATTATCACTCACATGGTCGTCCTAACATCAAAGATGTTTTAAAAGAAGGTCAAGAGGTAATCGTACAGGTAGATAAAGAAGAGCGCGGAAATAAAGGTGCAGCTTTAACCACCTTTATTAGCCTTGCAGGTAGCTATTTGGTATTAATGCCAAATAACCCTCGTGCTGGCGGTATTTCTCGTCGTATTGAAGGGGAAGATCGCACTGAATTAAAGGAAGCATTATCTAGCCTTGATATTCCTGATGGAATGGGATTAATTGTTCGTACTGCAGGTGTGGGTAAATCCGCAGAAGCATTACAACAAGATTTAAGCTACCGTTTAAGACATTGGGATGCTATCAAAAAAGCAGCGGAAAGCCGCCCTGCTCCTTTTCTGATCCACCAAGAAAGTAACGTGATTGTACGTGCTTTCCGTGATTATTTACGACCAGATATTGGTGAGATCTTAATTGATAACGCTAAAGTAGTTGAAATGGCTCGTAGCCATATTGAAGCCATTGGTCGTGGTGACTTTGCTAGCAAAATTCGCCACTACACAGGGGCTGTACCACTATTTAGTCACTACCAAATTGAATCTCAAATTGAATCAGCCTTCCAACGTGAAGTCCGTTTACCTTCGGGTGGCGCTCTGGTTATTGATACAACAGAAGCATTAACCGCTATCGATATTAACTCATCTCGTTCAACACGAGGTGGCGATATTGAAGAGACAGCCTTTAACACTAACTTAGAAGCTGCTGATGAAATTGCGCGCCAACTCCGTCTACGTGACCTTGGTGGTTTGATTGTTATCGACTTTATCGATATGACCCCTGTTCGTCATCAGCGTGAAGTGGAAAATAGAATGCGTGAGGCTGTGCGCCAAGATCGCGCACGTATTCAAATAGGTCGCATTTCGCGTTTCGGCTTATTAGAGATGTCACGTCAGCGTTTAAGTCCTTCATTAGGTGAATCAAGCCATCATGTTTGTCCGCGTTGTTTAGGCACCGGGACTATCCGTGATAATGAGTCACTTTCTCTTTCTGTATTGCGTCTTATCGAAGAAGAAGCATTAAAAGAAAATACTCATGAAGTACACGCTATTGTGCCCGTACAAATTGCCTCTTACTTGCTCAATGAAAAACGTAAGGCCGTCACCGATATTGAGTTGCGCCAAGCCAATGTCAAAGTAGTGATTGTTCCTAATGATCAAATGCAAACACCGCATTTCTCAGTTATTCGTGTGCGCAAGGGCGAAGAGATCTCTTCATTAAGCTACAATTTAGCGCAATATCACGAAACTCAGTTAAATGAAGCAGAAGATGAAGCCGTACCTGAGCGTAAAGCGCCAGAGCAACCGGCGATATCCGCTTTTGCATTACAAGATAATAGCGCTGACACCACCAATAAGAAAAAATCTGCACCAACTCCAGCTAAACAGGTGAAGAAAAGCGAAACAACAGAGAGTGGTGGATTCTTTAGTGCTATTGCAAAATTCTTCTCTAACTTATTTGCGAGTCAGCCAGAGCCTGTCGTTGAAGAAAAACCGCAAGAAAGCAAAAAAGAGAATAATGAAAACCGTCGTGAGCGCCGAAATAATAACAATCGTCGCAATAATAACCGCCGTGAACGCGATAATGATCGCAATCGTGACCACGAGCGCAATCGCGATAACGTAACGAGCGAAGAAAATCGTAAGAACCGTAATCAGAAAGCGCAAAATGCCAATACTGAAGTCAGTAATGAGCAAGAAATCGCTGAACGTGAAGCCCGTCGTCAACAACGCCGTGAACAACGTGCAGAACAACGTCGTCGTCAGGAAGAAAAACGTCAGCAACAACAAGAAGCTGCGAAAGCCGCACAAAATACAGCGGAAAATGACAATGCAGCAAAACAGGCTGAGAAGAAAGAAGAACCTCGTCGCCCTGTTATGCCTCGTCGTGCTCGCCGTCAATTAACGCAATCTGTTCGTGTTACTGATGCTGTCGCAACACCCGCTATTGATGTTGCTGTGAGCGACTCACCGGTTTCTGAGCCACCAGCGACAGTGGTTAGTCAATTACCATCATCAGAAAAACAGCAAGTTGCGAAACCAGTAGCGACGGTTAAAGATGAGCAAGAACAAGTTTCTGCTAATGCGTTAACTGATACTGTAAAAGCACAAGAAGAAGTGAAAAAAGAAGAGAATGCGGGCCAACAAGAAAATGTGATGCCACGTCGCTCTCGCCGTTCACCTCGTCATTTACGTGTTAGTGGGCAACGTCGTCGCCGTTATCGTGATGAACGTACATTAGTCTCCCCTATGCCGCTAACGATGGCCGTAGCTTCTCCAGAGCTTGCGTCAGGTAAAGTATGTATTCATTACCCTGTCACACCAATTAGTGATGCACCATTTGTTGACAATAATGTTGAAAATAGCACTGACAATACAGTTGCTAAAAACTTCATTACTCATAAAGATCCACAAATGGTTGCTATTGCACCAGAAGTATCAGAAACCATTGCTGCAGATGTTGCTCAGGCTCAAACAGCAAATACTGAAGCAACTGAAGCGACTTATTCGGTCACAGTTAGTACTGAATCAACCACTGAAGCTGTAGCTGAAATTGTCGCGATTGCACCGCAAGAAACGACTGCTGATGTTAATGAGTCAACTGCCGATCATGTAGAAGAAAACGCTGTTAACAACGTTATTGCTGACGTTAATACCCAAGAGCATGTTACTCGTAAAGAGAATATCTCTGCGGTATTAAATACAACGGAAGCTTATCTACATGAAGTGACTGAGCAAGCAGATGTTGCCGAAGAGAAAACAGAAACCACTCATAATAAAGTCATAGCTAATGCTGATCATGAAACCGCTAGTGAAGACACCCATAGTGACATGACAACGCAAGCGCCTGTACCTGAGATGCCAGCAACAACCCAAGCATCAACTGAATGTGCGGCTGAGCAGCATGTAGAGCAAACTGCTTCTCAATCTACGCCTGTAGAAACACAGCCTGAAGTGACCGAGCCTGTTGCTGAAACTAAAACGGAAACCGAAGTCGTATCGGTTGAAGTTAAGCAGCCAGCTAAAGTGACCGTTATTCGTCAAGAGCCAACAGTACGCCAGTTACATGCCAGCTCGCCAATGACGAAAGCTCCGGCATCTACAGATGCGCCTGTAGCAATTGAAATCAAAGCATGGGATGCACGTCCAGCCTTTGATAAGCAAGGCCGTAGCGGTGCGGGTGGTCATTGTTCAACTAATCATGCTTCATCTGAAATGACTAAAGCGTCAACGCATAGTGAGTCATAAGAGAAAAGAAGCAATAATATAACGCGATAAAATATCCGTTGTTAATCCAA