COG1530


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1530, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Ribonuclease G or E
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG1530 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_748 FBDBKF_03330 67493 68962 -1 rng ribonuclease G Morganella morganii S1
1 group_1968 FBDBKF_14760 47868 51032 1 rne ribonuclease E Morganella morganii S1
2 group_748 EHELCC_07205 178141 179610 1 rng ribonuclease G Morganella morganii S2
3 group_1968 EHELCC_15565 77944 81108 1 rne ribonuclease E Morganella morganii S2
4 group_748 NLDBIP_07530 178014 179483 1 rng ribonuclease G Morganella morganii S4
5 group_1968 NLDBIP_16095 77944 81108 1 rne ribonuclease E Morganella morganii S4
6 group_748 LHKJJB_07065 141760 143229 1 rng ribonuclease G Morganella morganii S3
7 group_1968 LHKJJB_15745 35578 38742 -1 rne ribonuclease E Morganella morganii S3
8 group_748 HKOGLL_03865 90158 91627 -1 rng ribonuclease G Morganella morganii S5
9 group_1968 HKOGLL_14865 34790 37954 -1 rne ribonuclease E Morganella morganii S5
10 group_1968 F4V73_RS07555 1576676 1579888 1 rne ribonuclease E Morganella psychrotolerans
11 group_748 F4V73_RS11605 470799 472268 1 rng ribonuclease G Morganella psychrotolerans
12 group_1968 PMI_RS04180 941186 944707 -1 rne ribonuclease E Proteus mirabilis HI4320
13 group_748 PMI_RS18085 3971790 3973259 1 rng ribonuclease G Proteus mirabilis HI4320