Homologs in group_19

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18 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07880 FBDBKF_07880 54.2 Morganella morganii S1 mtr tryptophan permease
FBDBKF_11130 FBDBKF_11130 41.4 Morganella morganii S1 sdaC Amino acid permease
FBDBKF_14845 FBDBKF_14845 69.7 Morganella morganii S1 mtr tryptophan permease
EHELCC_05095 EHELCC_05095 41.4 Morganella morganii S2 sdaC Amino acid permease
EHELCC_13710 EHELCC_13710 54.2 Morganella morganii S2 mtr tryptophan permease
EHELCC_15650 EHELCC_15650 69.7 Morganella morganii S2 mtr tryptophan permease
NLDBIP_05415 NLDBIP_05415 41.4 Morganella morganii S4 sdaC Amino acid permease
NLDBIP_14155 NLDBIP_14155 54.2 Morganella morganii S4 mtr tryptophan permease
NLDBIP_16180 NLDBIP_16180 69.7 Morganella morganii S4 mtr tryptophan permease
LHKJJB_02295 LHKJJB_02295 41.4 Morganella morganii S3 sdaC Amino acid permease
LHKJJB_08695 LHKJJB_08695 54.2 Morganella morganii S3 mtr tryptophan permease
LHKJJB_15660 LHKJJB_15660 69.7 Morganella morganii S3 mtr tryptophan permease
HKOGLL_08245 HKOGLL_08245 54.2 Morganella morganii S5 mtr tryptophan permease
HKOGLL_14780 HKOGLL_14780 69.7 Morganella morganii S5 mtr tryptophan permease
HKOGLL_15675 HKOGLL_15675 41.4 Morganella morganii S5 sdaC Amino acid permease
F4V73_RS07645 F4V73_RS07645 70.0 Morganella psychrotolerans mtr tryptophan permease
F4V73_RS08145 F4V73_RS08145 41.9 Morganella psychrotolerans - aromatic amino acid transporter
F4V73_RS13140 F4V73_RS13140 55.2 Morganella psychrotolerans mtr tryptophan permease

Distribution of the homologs in the orthogroup group_19

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_19

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q02DS7 4.47e-171 488 58 1 414 1 mtr Tryptophan-specific transport protein Pseudomonas aeruginosa (strain UCBPP-PA14)
P44614 5e-166 475 59 3 406 3 mtr Tryptophan-specific transport protein Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0AAD3 2.45e-149 432 54 1 414 3 mtr Tryptophan-specific transport protein Shigella flexneri
P0AAD2 2.45e-149 432 54 1 414 1 mtr Tryptophan-specific transport protein Escherichia coli (strain K12)
P23173 5.73e-120 358 46 5 408 1 tnaB Low affinity tryptophan permease Escherichia coli (strain K12)
Q8XB33 7.6e-119 355 46 5 408 3 tnaB Low affinity tryptophan permease Escherichia coli O157:H7
Q47825 2.14e-101 310 41 3 406 3 tutB Tyrosine permease Enterobacter agglomerans
P28785 6.02e-93 288 40 3 415 2 tnaB Low affinity tryptophan permease Proteus vulgaris
P0AAD5 3.37e-66 219 34 3 387 3 tyrP Tyrosine-specific transport system Shigella flexneri
P0AAD4 3.37e-66 219 34 3 387 1 tyrP Tyrosine-specific transport system Escherichia coli (strain K12)
P44727 9.64e-52 181 30 3 384 3 tyrP-A Tyrosine-specific transport system 1 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P44747 8.35e-41 152 29 3 400 3 tyrP-B Tyrosine-specific transport system 2 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q5E5M9 2.92e-26 112 25 13 389 3 VF_1172 Glutamine transporter 2 Aliivibrio fischeri (strain ATCC 700601 / ES114)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS04105
Feature type CDS
Gene mtr
Product tryptophan permease
Location 917328 - 918569 (strand: -1)
Length 1242 (nucleotides) / 413 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_19
Orthogroup size 19
N. genomes 7

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Genomic region

Domains

PF03222 Tryptophan/tyrosine permease family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0814 Amino acid transport and metabolism (E) E Amino acid permease

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03835 tryptophan-specific transport protein - -

Protein Sequence

MSEVTSIAKRPSILGGAMIIAGTAVGAGMFSIPIVTSGVWFTGSIFLLIYTWFCLFMSGLMILEVNLHYPLGSSFHTITKDLLGKGWSTINGLSIAFVLYILTYAYISAGSSIIVQNFANVVSLPQAVAGLVFALVVAFFVWLSTRAVDRLSTILIGGMIVAFVFAIGGLFTEVKMPVLFNTTESHASYLPYALAALPYLLTSFGYHGNIPGLVTYYRKDGKAVMKSLLIGTLISLAIYILWQFVVQGNIPREGFKQVIAEGGNIGNLLAQMRINTANTSVSFLLDLFSYMALASSFLGVSLGLFDYLADFFKFSNTGTGRLKSAIVTFVPPTILAIIFPDGFLYAIGFAGLAATIWAAIIPALMAKASRQRHQQQSFKAPGGTFMIIFVILFGAINAIAHILANFNLLPIYR

Flanking regions ( +/- flanking 50bp)

CTCTACACTATCAAGCTAGTACATTGAGTCATTTTTTATAAGGACATGTTATGTCAGAAGTCACATCCATTGCTAAACGCCCATCTATACTCGGTGGTGCGATGATTATTGCCGGTACGGCGGTAGGCGCCGGTATGTTCTCCATCCCTATTGTGACTTCCGGTGTGTGGTTTACCGGCTCTATCTTTTTACTCATTTATACTTGGTTTTGCCTATTTATGTCTGGCTTAATGATCTTAGAAGTTAATCTTCACTACCCCCTAGGATCAAGCTTTCATACTATTACCAAAGATTTATTAGGTAAGGGATGGAGTACCATTAATGGTCTTTCTATTGCTTTTGTTCTCTATATTTTAACTTATGCCTATATTTCTGCAGGTAGCTCCATCATTGTGCAAAATTTTGCTAATGTGGTTAGCTTGCCACAAGCCGTTGCAGGCTTAGTATTTGCCCTTGTTGTTGCTTTCTTCGTTTGGTTATCAACCCGAGCCGTTGATCGCTTAAGTACCATATTAATTGGCGGTATGATTGTGGCTTTTGTATTTGCTATCGGTGGATTATTTACCGAAGTGAAAATGCCAGTATTATTTAATACAACAGAAAGCCATGCCAGTTATTTACCTTATGCACTAGCCGCATTACCTTATTTATTAACCTCCTTTGGTTATCACGGCAATATTCCTGGATTAGTCACCTACTACCGTAAAGACGGTAAAGCCGTGATGAAAAGTCTATTAATTGGTACCTTGATTTCGCTGGCTATCTACATTTTATGGCAGTTTGTTGTACAAGGTAATATTCCTCGTGAAGGCTTTAAACAAGTCATTGCTGAAGGCGGAAATATTGGTAACTTACTGGCACAAATGCGTATCAATACAGCAAATACTTCCGTTTCATTCTTATTAGACTTGTTCTCATATATGGCATTAGCGAGTTCATTTTTAGGCGTGTCTTTAGGGTTATTTGATTATTTAGCTGATTTCTTTAAATTCTCAAATACTGGGACAGGACGTTTAAAATCAGCCATCGTAACTTTTGTACCACCTACCATTCTAGCGATTATTTTTCCTGATGGCTTCTTGTATGCTATTGGCTTTGCAGGACTTGCAGCCACTATTTGGGCGGCGATTATTCCAGCATTAATGGCAAAAGCCAGTCGCCAACGTCATCAGCAACAAAGCTTTAAAGCACCTGGTGGCACCTTTATGATTATCTTTGTGATCTTATTTGGTGCAATTAATGCGATTGCACACATATTAGCAAACTTTAATCTCCTACCTATTTACCGCTGATCTTCCGTCAAGCCAGCAATATGCTGGCTTGAACCTTCTTCTGCCAAAAA