Homologs in group_388

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14890 FBDBKF_14890 74.2 Morganella morganii S1 sSL2 Superfamily II DNA or RNA helicase
FBDBKF_16605 FBDBKF_16605 26.9 Morganella morganii S1 - Type I restriction enzyme endonuclease subunit
EHELCC_15695 EHELCC_15695 74.2 Morganella morganii S2 sSL2 Superfamily II DNA or RNA helicase
NLDBIP_16225 NLDBIP_16225 74.2 Morganella morganii S4 sSL2 Superfamily II DNA or RNA helicase
LHKJJB_15615 LHKJJB_15615 74.2 Morganella morganii S3 sSL2 Superfamily II DNA or RNA helicase
HKOGLL_14735 HKOGLL_14735 74.2 Morganella morganii S5 sSL2 Superfamily II DNA or RNA helicase
F4V73_RS07690 F4V73_RS07690 74.9 Morganella psychrotolerans - DEAD/DEAH box helicase

Distribution of the homologs in the orthogroup group_388

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_388

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P33919 0.0 881 70 1 586 1 radD Putative DNA repair helicase RadD Escherichia coli (strain K12)
Q1MTR1 2.88e-33 137 30 12 370 3 irc3 Putative mitochondrial ATP-dependent helicase irc3 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q06683 1.89e-23 108 24 12 385 1 IRC3 Putative ATP-dependent helicase IRC3 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P24125 2.05e-23 107 26 14 346 4 None 51.5 kDa protein Lactococcus phage (isolate 7-9)
Q07736 1.51e-17 90 24 14 388 1 hsdR Type I restriction enzyme EcoAI endonuclease subunit Escherichia coli
Q47281 2.99e-11 70 23 15 389 3 hsdR Type I restriction enzyme EcoEI endonuclease subunit Escherichia coli
P08956 5.08e-11 69 24 18 451 1 hsdR Type I restriction enzyme EcoKI endonuclease subunit Escherichia coli (strain K12)
Q971U1 1.44e-08 61 22 11 376 1 xpb1 DNA 3'-5' helicase/translocase StoXPB1 Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
Q914K8 4.39e-07 56 21 13 392 4 SIFV0022 Putative helicase 22 Sulfolobus islandicus filamentous virus (isolate Iceland/Hveragerdi)
Q99J87 7.69e-07 55 29 8 175 1 Dhx58 ATP-dependent RNA helicase DHX58 Mus musculus
Q9BYX4 1.28e-05 52 26 6 189 1 IFIH1 Interferon-induced helicase C domain-containing protein 1 Homo sapiens
Q9HPZ2 2.43e-05 50 23 13 337 3 rad25 Putative DNA 3'-5' helicase Rad25 Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
Q8R5F7 0.000217 48 27 6 189 1 Ifih1 Interferon-induced helicase C domain-containing protein 1 Mus musculus
A0A1D5PRR9 0.000232 48 31 7 165 1 FANCM Fanconi anemia group M protein Gallus gallus
Q4WKB5 0.000266 47 29 6 144 3 mph1 ATP-dependent DNA helicase mph1 Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293)
B0XMV6 0.000266 47 29 6 144 3 mph1 ATP-dependent DNA helicase mph1 Aspergillus fumigatus (strain CBS 144.89 / FGSC A1163 / CEA10)
Q970I2 0.000475 46 31 6 151 1 xpb2 DNA 3'-5' translocase XPB2 Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
A1D4V5 0.000532 47 28 6 143 3 mph1 ATP-dependent DNA helicase mph1 Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS04060
Feature type CDS
Gene -
Product DEAD/DEAH box helicase
Location 908621 - 910384 (strand: -1)
Length 1764 (nucleotides) / 587 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_388
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF00271 Helicase conserved C-terminal domain
PF04851 Type III restriction enzyme, res subunit

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1061 Transcription (K)
Replication, recombination and repair (L)		 KL Superfamily II DNA or RNA helicase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K19789 DNA repair protein RadD - -

Protein Sequence

MAFTLRPYQLDAVNATITYFRQHKTPALIVLPTGAGKSLVIAELAKRARGRVLVLAHVKELVEQNHSKYEAYGLSADIYAAGLQQKESRGKVVFGSVQSVARNLSQFEHAFSLLIIDECHRISLSEDSQYQQVIKQLQTINPQLRILGLTATPYRLPTGWIYQYHYHGMVKGDDNCFFRDCIYELPLRYMISHHFLVPPTRLDMPILQYDFSQVRTSQNGIFNQEDLNREVKKQQRITPHIVSQIIEYGEQRRGVMIFAATVEHATEIFTLLPQGQAALVSAETPSSERDALISQFKQQQLRYMVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLFAGKTECLILDYAGNPHDLYLPEVGSKKPNPNSKPVQVFCPLCQFANTFWGIVDADGDIIEHYGRRCQGWELDEQGQKKQCDYRFRFKLCPHCNEENDIAARRCVHCNEILVDPDDMLKAALKLKGALILRCGGMQLLSGQDEKGEWLKINYYDEEGTSVSERFRLKTPAQRKVFELKFLHEHQRAPGVPLVWHNAQDIINQFDLLRYPDFIVAQKNKKDGFWQIRNKLFDYHGRFRKADTLY

Flanking regions ( +/- flanking 50bp)

TCGCTAAAAAGTGCTACGCTGGTGCTCTGTTTTGCTTTTGATGTATGGTTATGGCTTTTACACTTAGACCTTATCAGCTTGACGCGGTTAACGCGACAATCACTTATTTTCGCCAACATAAAACACCAGCACTTATTGTATTACCTACCGGTGCTGGAAAAAGCTTAGTCATTGCCGAACTTGCTAAAAGAGCACGTGGGCGGGTATTGGTTCTAGCACATGTAAAGGAATTAGTAGAGCAGAACCATAGCAAATATGAAGCCTATGGTCTATCTGCGGATATTTATGCCGCCGGATTACAGCAAAAAGAGAGTCGAGGCAAGGTTGTTTTCGGCAGTGTACAATCGGTAGCACGTAACTTATCGCAGTTTGAGCATGCTTTTTCTCTATTAATTATTGATGAATGTCACCGTATTAGTCTGTCTGAAGATAGCCAATACCAACAAGTGATCAAACAACTTCAAACCATTAACCCCCAACTACGCATCTTAGGATTAACGGCTACTCCTTATCGTTTACCGACTGGTTGGATTTACCAATATCACTATCACGGTATGGTAAAAGGAGATGACAATTGCTTTTTTCGTGACTGTATTTATGAATTACCTTTACGCTACATGATAAGTCACCATTTCTTAGTCCCACCAACACGTTTAGATATGCCTATTTTGCAATATGACTTTAGCCAAGTTAGAACTAGCCAAAATGGTATTTTTAATCAAGAAGATCTCAATCGCGAAGTAAAAAAACAACAGCGTATTACACCCCATATTGTGTCACAGATAATTGAATACGGTGAACAACGCCGTGGTGTGATGATATTTGCGGCAACAGTCGAACATGCGACAGAAATCTTCACATTATTACCCCAAGGACAAGCCGCGTTAGTCAGTGCTGAGACCCCCTCTTCTGAGCGTGACGCATTAATTTCACAGTTTAAACAGCAACAGCTACGTTATATGGTTAATGTTGCTGTATTAACCACAGGCTTTGATGCGCCCCATGTTGATTTAATTGCTATTTTACGTCCAACGGAGTCCGTCAGTTTATATCAACAAATAGTAGGACGAGGATTAAGGTTATTTGCAGGAAAAACAGAATGTTTAATCTTAGATTATGCAGGTAACCCTCACGACCTTTATCTTCCTGAAGTGGGTAGTAAAAAGCCCAATCCAAATAGCAAACCGGTACAAGTGTTTTGTCCTCTCTGTCAATTCGCTAACACTTTCTGGGGCATAGTTGATGCAGATGGCGATATTATTGAGCACTATGGGCGACGTTGCCAAGGTTGGGAGCTTGATGAGCAAGGACAAAAAAAACAGTGTGATTATCGCTTTCGTTTTAAATTATGCCCACACTGTAATGAAGAAAATGATATCGCCGCACGGCGTTGTGTGCACTGTAATGAAATCCTAGTTGATCCTGATGATATGCTCAAAGCCGCTTTAAAGCTAAAAGGCGCCCTTATCCTTCGCTGTGGAGGAATGCAATTACTCAGTGGTCAAGATGAAAAAGGTGAGTGGCTTAAAATCAACTATTATGATGAAGAAGGTACTTCTGTTTCAGAACGATTTCGTTTAAAAACGCCTGCCCAACGTAAAGTATTTGAACTCAAGTTTTTACACGAACACCAGCGCGCCCCTGGCGTTCCTTTGGTATGGCATAACGCTCAAGATATTATTAATCAGTTTGATTTATTACGTTATCCTGATTTTATTGTGGCACAAAAAAATAAAAAAGACGGCTTTTGGCAAATTCGTAATAAGTTATTTGACTATCATGGACGCTTTCGTAAAGCAGATACCTTATATTAAAGTCGATTTATATTTGCTGTTAGAGTGCTTTTTCGTTAAAATGCGCCCCG