Orthogroup:group_388


Homologs in group_388

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_14890 FBDBKF_14890 Morganella morganii S1 sSL2 Superfamily II DNA or RNA helicase
FBDBKF_16605 FBDBKF_16605 Morganella morganii S1 - Type I restriction enzyme endonuclease subunit
EHELCC_15695 EHELCC_15695 Morganella morganii S2 sSL2 Superfamily II DNA or RNA helicase
NLDBIP_16225 NLDBIP_16225 Morganella morganii S4 sSL2 Superfamily II DNA or RNA helicase
LHKJJB_15615 LHKJJB_15615 Morganella morganii S3 sSL2 Superfamily II DNA or RNA helicase
HKOGLL_14735 HKOGLL_14735 Morganella morganii S5 sSL2 Superfamily II DNA or RNA helicase
F4V73_RS07690 F4V73_RS07690 Morganella psychrotolerans - DEAD/DEAH box helicase
PMI_RS04060 PMI_RS04060 Proteus mirabilis HI4320 - DEAD/DEAH box helicase

Distribution of group_388 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_388 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_388

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_388.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 sSL2 5
2 - 3

Product

# Product Occurence
1 Superfamily II DNA or RNA helicase 5
2 Type I restriction enzyme endonuclease subunit 1
3 DEAD/DEAH box helicase 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0610 1 V Defense mechanisms (V) Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ...
COG1061 7 KL Transcription (K)
Replication, recombination and repair (L)		 Superfamily II DNA or RNA helicase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K01153 1 type I restriction enzyme, R subunit [EC:3.1.21.3] - -
K19789 7 DNA repair protein RadD - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00271 7 Helicase conserved C-terminal domain
PF04313 1 Type I restriction enzyme R protein N terminus (HSDR_N)
PF04851 7 Type III restriction enzyme, res subunit
PF12008 1 Type I restriction and modification enzyme - subunit R C terminal
PF18766 1 SWI2/SNF2 ATPase
PF22679 1 UvrB domain 3

Annotations of the 51 SwissProt hits

Annotation Number of occurrences
51.5 kDa protein 1
ATP-dependent DNA helicase Hel308 4
ATP-dependent DNA helicase MPH1 2
ATP-dependent DNA helicase mph1 5
ATP-dependent DNA helicase uvsW 1
ATP-dependent RNA helicase DHX58 1
DEAD-box ATP-dependent DNA helicase Fancm 1
DNA 3'-5' helicase/translocase StoXPB1 1
DNA 3'-5' translocase XPB 1
DNA 3'-5' translocase XPB2 1
Fanconi anemia group M protein 1
Interferon-induced helicase C domain-containing protein 1 2
Putative ATP-dependent DNA helicase Q1 2
Putative ATP-dependent DNA helicase fml2 1
Putative ATP-dependent helicase IRC3 1
Putative DNA 3'-5' helicase Rad25 1
Putative DNA repair helicase RadD 1
Putative helicase 22 1
Putative mitochondrial ATP-dependent helicase irc3 1
Putative type I restriction enzyme MjaIXP endonuclease subunit 1
Putative type I restriction enzyme MjaVIIIP endonuclease subunit 1
Putative type I restriction enzyme MjaVIIP endonuclease subunit 1
Putative type I restriction enzyme MpnIIP endonuclease subunit C-terminal part 1
Putative type I restriction enzyme MpnIIP endonuclease subunit N-terminal part 1
Type I restriction enzyme EcoAI endonuclease subunit 1
Type I restriction enzyme EcoEI endonuclease subunit 1
Type I restriction enzyme EcoKI endonuclease subunit 1
Type I restriction enzyme EcoR124I/EcoR124II endonuclease subunit 1
Type I restriction enzyme EcoprrI endonuclease subunit 1
Type I restriction enzyme HindI endonuclease subunit 1
Type I restriction enzyme SauCOLORF180P endonuclease subunit 1
Type I restriction enzyme SauMRSORF196P endonuclease subunit 1
Type I restriction enzyme SauMSSORF170P endonuclease subunit 1
Type I restriction enzyme SauMW2ORF169P endonuclease subunit 1
Type I restriction enzyme SauMu50ORF195P endonuclease subunit 1
Type I restriction enzyme SauN315I endonuclease subunit 1
Type I restriction enzyme SepRPIP endonuclease subunit 1
Type I restriction enzyme SsaAORF53P endonuclease subunit 1
Uncharacterized protein HI_1650 1
UvrABC system protein B 2

Protein length

Min length 586
Max length 1040
Mean length (sd) 642.9 (160.5)
Median length 586.0

Protein length distribution