COG1061


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1061, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 18 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Superfamily II DNA or RNA helicase
Function(s) descr. Transcription (K)
Replication, recombination and repair (L)

Occurence in the database

COG1061 is associated with 18 different proteins (see tab "Protein list" and "Profile")
The 18 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3387 FBDBKF_13190 27210 28787 -1 Helicase Morganella morganii S1
1 group_388 FBDBKF_14890 78428 80188 1 sSL2 Superfamily II DNA or RNA helicase Morganella morganii S1
2 group_3637 FBDBKF_20620 7 2136 1 hypothetical protein Morganella morganii S1
3 group_3637 EHELCC_04305 188153 191134 1 DEAD/DEAH box helicase family protein Morganella morganii S2
4 group_3387 EHELCC_08905 246404 247981 1 Helicase Morganella morganii S2
5 group_388 EHELCC_15695 108504 110264 1 sSL2 Superfamily II DNA or RNA helicase Morganella morganii S2
6 group_3637 NLDBIP_04305 187949 190930 1 DEAD/DEAH box helicase family protein Morganella morganii S4
7 group_3387 NLDBIP_09230 246404 247981 1 Helicase Morganella morganii S4
8 group_388 NLDBIP_16225 108504 110264 1 sSL2 Superfamily II DNA or RNA helicase Morganella morganii S4
9 group_3387 LHKJJB_05035 9178 10755 -1 Helicase Morganella morganii S3
10 group_3637 LHKJJB_10135 188063 191044 1 DEAD/DEAH box helicase family protein Morganella morganii S3
11 group_388 LHKJJB_15615 6422 8182 -1 sSL2 Superfamily II DNA or RNA helicase Morganella morganii S3
12 group_3387 HKOGLL_05880 230995 232572 1 Helicase Morganella morganii S5
13 group_3637 HKOGLL_08840 8 2989 -1 DEAD/DEAH box helicase family protein Morganella morganii S5
14 group_388 HKOGLL_14735 5634 7394 -1 sSL2 Superfamily II DNA or RNA helicase Morganella morganii S5
15 group_388 F4V73_RS07690 1607984 1609744 1 DEAD/DEAH box helicase Morganella psychrotolerans
16 group_322 F4V73_RS18290 96901 98547 1 DEAD/DEAH box helicase Morganella psychrotolerans
17 group_388 PMI_RS04060 908621 910384 -1 DEAD/DEAH box helicase Proteus mirabilis HI4320