Homologs in group_125

Help

10 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_12390 FBDBKF_12390 38.6 Morganella morganii S1 - Primosomal protein I
FBDBKF_12880 FBDBKF_12880 26.3 Morganella morganii S1 - Phage terminase, large subunit
FBDBKF_18710 FBDBKF_18710 38.1 Morganella morganii S1 - Primosomal protein I
EHELCC_15285 EHELCC_15285 38.1 Morganella morganii S2 - Primosomal protein I
EHELCC_19155 EHELCC_19155 37.6 Morganella morganii S2 - Primosomal protein I
NLDBIP_15815 NLDBIP_15815 38.1 Morganella morganii S4 - Primosomal protein I
NLDBIP_19125 NLDBIP_19125 37.6 Morganella morganii S4 - Primosomal protein I
LHKJJB_16025 LHKJJB_16025 38.1 Morganella morganii S3 - Primosomal protein I
LHKJJB_19015 LHKJJB_19015 37.6 Morganella morganii S3 - Primosomal protein I
HKOGLL_15145 HKOGLL_15145 38.1 Morganella morganii S5 - Primosomal protein I

Distribution of the homologs in the orthogroup group_125

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_125

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P03687 2.02e-22 96 42 1 107 3 18 DNA replication protein gp18 Salmonella phage P22

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS02395
Feature type CDS
Gene -
Product helix-turn-helix domain-containing protein
Location 538355 - 539122 (strand: 1)
Length 768 (nucleotides) / 255 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_125
Orthogroup size 11
N. genomes 6

Actions

Genomic region

Domains

PF13730 Helix-turn-helix domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1974 Transcription (K)
Signal transduction mechanisms (T)
KT SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)

Protein Sequence

MSMLLMAKAMQLQVGSTAQKMVLLKLADNANDKGECFPSYETIARHCEISRQSAINHIKSLCKKGFVRKVTRKTDKVHTSNLYILDLEAKSLDDGSQNTVPPSQNSVPEVVKEFDHGSQTVGLGGSQKFLPRTSQSFNQSINLKKLSSDDSKPAKQISINRQAKIPYQEIMQAFNESVGDRLPNAESLNDKRKRAISKFLKELKEPTVESAKNYFDYFMETASAWYFGENNRGWRANFDYLLRPETVLKTREGAL

Flanking regions ( +/- flanking 50bp)

GACGCAAAATTAAGGAAAGCACATCGGGATAAGTTATTAGGAGAGCGAAAATGAGTATGCTTCTAATGGCAAAAGCCATGCAATTACAGGTGGGGAGTACAGCACAAAAAATGGTGCTACTGAAACTTGCTGATAATGCCAATGATAAAGGTGAGTGCTTTCCTTCTTATGAGACTATTGCACGTCATTGCGAAATTAGCCGTCAAAGTGCGATAAACCACATTAAAAGTTTATGTAAAAAAGGGTTTGTTCGTAAAGTTACGCGAAAAACTGATAAGGTGCATACTTCCAATTTATATATTCTGGATTTGGAGGCTAAATCTCTTGATGACGGTAGTCAAAATACAGTACCACCTAGTCAAAATTCTGTACCAGAGGTAGTCAAAGAATTTGACCACGGTAGTCAAACGGTTGGACTAGGGGGTAGTCAAAAATTTTTACCCAGAACCAGTCAGTCTTTTAACCAGTCAATTAACCTTAAAAAACTATCGTCTGACGACTCGAAACCTGCAAAGCAGATTTCAATTAATCGACAAGCTAAAATTCCTTATCAGGAAATCATGCAAGCCTTCAACGAATCGGTAGGGGATAGATTACCCAATGCCGAATCACTGAATGACAAACGCAAACGAGCAATATCCAAATTCCTGAAAGAGCTCAAAGAACCCACAGTTGAATCAGCTAAAAATTATTTTGATTATTTTATGGAAACGGCGAGTGCTTGGTATTTTGGCGAAAATAATCGGGGTTGGCGAGCGAATTTTGATTATTTACTCAGACCTGAAACGGTACTCAAAACAAGGGAAGGAGCACTGTGATGAACCAAGTTCCGAATAATTTAATGGCGGAACAAAATGTTATTGGAGGA