Homologs in group_75

Help

12 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10865 FBDBKF_10865 71.2 Morganella morganii S1 speF ornithine decarboxylase SpeF
FBDBKF_18200 FBDBKF_18200 100.0 Morganella morganii S1 speF Arginine/lysine/ornithine decarboxylase
EHELCC_05360 EHELCC_05360 71.2 Morganella morganii S2 speF ornithine decarboxylase SpeF
EHELCC_18235 EHELCC_18235 100.0 Morganella morganii S2 speF Arginine/lysine/ornithine decarboxylase
NLDBIP_05680 NLDBIP_05680 71.2 Morganella morganii S4 speF ornithine decarboxylase SpeF
LHKJJB_02560 LHKJJB_02560 71.2 Morganella morganii S3 speF ornithine decarboxylase SpeF
LHKJJB_18355 LHKJJB_18355 100.0 Morganella morganii S3 speF Arginine/lysine/ornithine decarboxylase
HKOGLL_15940 HKOGLL_15940 71.2 Morganella morganii S5 speF ornithine decarboxylase SpeF
HKOGLL_18090 HKOGLL_18090 100.0 Morganella morganii S5 speF Arginine/lysine/ornithine decarboxylase
F4V73_RS01740 F4V73_RS01740 81.5 Morganella psychrotolerans speC ornithine decarboxylase
F4V73_RS11525 F4V73_RS11525 70.9 Morganella psychrotolerans speF ornithine decarboxylase SpeF
PMI_RS01480 PMI_RS01480 69.8 Proteus mirabilis HI4320 speF ornithine decarboxylase SpeF

Distribution of the homologs in the orthogroup group_75

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_75

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P24169 0.0 986 66 3 720 1 speF Inducible ornithine decarboxylase Escherichia coli (strain K12)
P21169 0.0 963 65 3 712 1 speC Constitutive ornithine decarboxylase Escherichia coli (strain K12)
P44317 0.0 943 63 3 699 3 speF Ornithine decarboxylase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P43099 0.0 767 54 5 683 1 odcI Inducible ornithine decarboxylase Lactobacillus sp. (strain 30a)
Q9I2S7 6.46e-117 372 34 12 685 1 ldcA Lysine decarboxylase LdcA Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P28629 2.42e-106 344 32 16 684 1 adiA Biodegradative arginine decarboxylase Escherichia coli (strain K12)
P0A9H3 8.28e-101 328 33 12 619 1 cadA Inducible lysine decarboxylase Escherichia coli (strain K12)
P0A9H4 8.28e-101 328 33 12 619 3 cadA Inducible lysine decarboxylase Escherichia coli O157:H7
P05033 1.51e-99 325 33 15 620 3 None Lysine decarboxylase Hafnia alvei
P0A1Z0 2.29e-98 322 33 13 610 3 cadA Inducible lysine decarboxylase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1Z1 2.29e-98 322 33 13 610 3 cadA Inducible lysine decarboxylase Salmonella typhi
P52095 5.13e-98 321 33 15 631 1 ldcC Constitutive lysine decarboxylase Escherichia coli (strain K12)
P21885 2.62e-25 114 24 22 571 1 speA Arginine decarboxylase Bacillus subtilis (strain 168)
Q9K9K5 8.68e-24 109 24 22 575 3 speA Arginine decarboxylase Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Q81MS2 9.3e-20 96 23 20 574 3 speA Arginine decarboxylase Bacillus anthracis
Q819L4 2.25e-18 92 23 19 570 3 speA Arginine decarboxylase Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
P37536 2.12e-10 67 24 13 314 3 yaaO Uncharacterized protein YaaO Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_18160
Feature type CDS
Gene speF
Product Arginine/lysine/ornithine decarboxylase
Location 5521 - 7695 (strand: 1)
Length 2175 (nucleotides) / 724 (amino acids)

Contig

Accession ZDB_540
Length 35191 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_75
Orthogroup size 13
N. genomes 7

Actions

Genomic region

Domains

PF01276 Orn/Lys/Arg decarboxylase, major domain
PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1982 Amino acid transport and metabolism (E) E Arginine/lysine/ornithine decarboxylase

Protein Sequence

MNKKKCAVSELLSGMPDLPFETVSLSECDFTAVSVCLVAPADTGNGQLARIRQQGFGQPVFMVLSGGDAEALPDGISGVIDLCRDDSRTVGDTLLRAAQSCEESLLPPFFGRMKHYTAQQNISFACPGHQGGEFFRRHPAGQQFTDYFGDALFRADLCNADTALGDLLIHEGAALAAQQHAAKVFHADKTWFVLNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHGALIQAGATPVYLEAARNPFGFIGGIDAHCFDEDYLRALAAEAAPEKAGDKRPFRLAVIQLGTYDGTVYNARQVVDSIGPLCDYILFDSAWVGYEQFIPVMQMCSPMLLELNENDPGILVTQSVHKQMAGFSQASQIHKKDKHIKGQARYVSFRQMNNAFMMHASTSPFYPLFAALDVNAKMHEGEPGRRLWAECVRTGIEARKLLLRTCQHIRPFIPATVDGRPWEESETGVIAADRRFFNFVPGERWHGFEGYADDQYFVDPCKLLLTTPGVDVSSGEYEDFGVPATILAYYLRENQIIAEKCDLNSILFLLTPAETPEKMQRLIRQIARFEQLLDSDAALEIVLPSLCRTYPARYAGYTLRQLCQEMHNLFVKHNVKQRQKEMFRRRCFPAVRMSPKAAHTEFVRGNTERVAVSEIAGRIAAEGALPYPPGVLCVVPGEVWEAPVQRYFLALEETADRFPGFAPELQGAYIEQDDSGHQRVYACVIRHQQGEGQ

Flanking regions ( +/- flanking 50bp)

CGTACTCTGCTGACACCTGTTGTCAGCGGAGATGACTTTGCAGGGTTGTCATGAACAAGAAAAAATGTGCGGTCAGTGAGCTGCTCAGCGGCATGCCGGATCTCCCGTTTGAAACGGTTTCTCTCAGTGAGTGTGATTTCACGGCGGTGTCTGTGTGTCTGGTGGCACCGGCAGATACCGGCAACGGCCAGCTGGCGCGGATCCGGCAACAGGGCTTCGGCCAGCCGGTTTTTATGGTGCTCAGCGGCGGTGACGCAGAGGCGCTGCCGGATGGTATCAGCGGAGTTATCGATCTCTGCCGCGATGACAGCCGTACGGTCGGTGACACACTTCTGCGTGCGGCACAATCCTGTGAAGAGAGTCTGCTGCCGCCGTTTTTCGGGCGGATGAAACATTATACCGCGCAGCAGAATATCTCCTTTGCCTGTCCCGGCCATCAGGGCGGGGAGTTTTTCCGCCGTCATCCCGCCGGGCAGCAGTTTACCGACTATTTCGGCGATGCATTGTTCCGGGCTGATCTCTGCAATGCAGATACCGCGCTGGGGGATCTCCTGATCCACGAAGGGGCGGCGCTGGCCGCGCAACAGCATGCCGCGAAAGTCTTTCATGCTGATAAGACCTGGTTTGTGCTCAACGGCACGTCGTCATCCAACAAAGTGGTGCTGAATGCTCTGCTGACACCGGGTGATCTGGTGTTATTCGATCGTAATAACCACAAATCCAACCATCACGGTGCACTGATCCAGGCCGGTGCCACACCGGTTTATCTGGAGGCGGCGCGTAACCCGTTCGGTTTTATCGGCGGCATTGACGCACACTGTTTTGATGAGGATTACCTGCGGGCACTGGCGGCGGAAGCCGCACCGGAAAAAGCGGGCGACAAACGTCCGTTCCGGCTGGCGGTGATCCAGCTGGGGACGTATGACGGTACGGTGTATAACGCCCGTCAGGTGGTGGACAGCATCGGCCCGCTGTGTGATTACATTTTGTTTGATTCCGCGTGGGTCGGCTATGAGCAGTTTATCCCGGTGATGCAGATGTGTTCACCGATGCTGCTGGAACTGAATGAAAACGACCCCGGCATTCTGGTAACGCAATCTGTTCACAAACAGATGGCCGGGTTCTCTCAGGCGTCTCAGATCCACAAAAAAGATAAACATATCAAAGGTCAGGCGCGTTATGTCTCTTTCCGGCAGATGAATAACGCTTTTATGATGCATGCCTCCACCAGCCCGTTTTATCCGCTGTTTGCCGCACTGGATGTGAACGCGAAAATGCATGAGGGCGAACCCGGACGGCGTCTGTGGGCGGAATGTGTCAGAACGGGGATTGAAGCCCGTAAACTGCTGCTGCGGACGTGTCAGCATATCCGTCCCTTTATCCCCGCTACCGTGGACGGCCGTCCGTGGGAAGAGTCGGAAACCGGTGTTATCGCCGCAGACCGGCGTTTTTTCAATTTTGTACCGGGCGAGCGCTGGCACGGTTTTGAGGGTTATGCGGACGATCAGTATTTTGTCGATCCCTGCAAATTATTGCTGACCACCCCCGGGGTGGATGTCAGCAGCGGAGAGTATGAGGATTTTGGCGTTCCGGCGACGATTCTGGCGTATTATCTGCGTGAAAATCAGATTATCGCGGAAAAATGTGACCTGAATTCCATCCTGTTTTTACTGACTCCGGCAGAAACGCCGGAAAAAATGCAGCGGCTGATCCGGCAGATTGCCCGGTTTGAGCAGCTGCTGGACAGCGATGCGGCACTGGAAATCGTCCTGCCGTCACTGTGCCGCACGTATCCGGCGCGTTATGCGGGATATACACTGCGGCAGTTGTGTCAGGAAATGCACAATCTGTTTGTGAAACATAATGTTAAACAGCGCCAGAAAGAGATGTTCCGCCGCCGCTGTTTTCCTGCAGTACGGATGTCGCCGAAAGCGGCACATACTGAATTTGTCCGCGGCAATACAGAGCGGGTGGCGGTGTCAGAGATAGCCGGACGTATCGCGGCGGAAGGGGCTCTGCCGTATCCGCCGGGTGTTTTGTGTGTGGTGCCGGGGGAAGTCTGGGAAGCCCCGGTTCAGCGCTATTTCCTCGCGCTGGAAGAGACCGCCGATCGCTTTCCGGGCTTCGCGCCGGAATTGCAGGGGGCGTATATTGAACAGGATGACAGCGGACACCAGCGTGTGTATGCCTGTGTTATCCGCCATCAGCAGGGAGAAGGACAATGACAGCAGAACAAAGCGGAACTCTGTTCTGCGGGACCGGCATGGACGTTCTG