Orthogroup:group_75


Homologs in group_75

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13 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_10865 FBDBKF_10865 Morganella morganii S1 speF ornithine decarboxylase SpeF
FBDBKF_18200 FBDBKF_18200 Morganella morganii S1 speF Arginine/lysine/ornithine decarboxylase
EHELCC_05360 EHELCC_05360 Morganella morganii S2 speF ornithine decarboxylase SpeF
EHELCC_18235 EHELCC_18235 Morganella morganii S2 speF Arginine/lysine/ornithine decarboxylase
NLDBIP_05680 NLDBIP_05680 Morganella morganii S4 speF ornithine decarboxylase SpeF
NLDBIP_18160 NLDBIP_18160 Morganella morganii S4 speF Arginine/lysine/ornithine decarboxylase
LHKJJB_02560 LHKJJB_02560 Morganella morganii S3 speF ornithine decarboxylase SpeF
LHKJJB_18355 LHKJJB_18355 Morganella morganii S3 speF Arginine/lysine/ornithine decarboxylase
HKOGLL_15940 HKOGLL_15940 Morganella morganii S5 speF ornithine decarboxylase SpeF
HKOGLL_18090 HKOGLL_18090 Morganella morganii S5 speF Arginine/lysine/ornithine decarboxylase
F4V73_RS01740 F4V73_RS01740 Morganella psychrotolerans speC ornithine decarboxylase
F4V73_RS11525 F4V73_RS11525 Morganella psychrotolerans speF ornithine decarboxylase SpeF
PMI_RS01480 PMI_RS01480 Proteus mirabilis HI4320 speF ornithine decarboxylase SpeF

Distribution of group_75 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_75 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_75

Orthogroup content: 13 members

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This page summarizes the annotation of all members of the orthologous group group_75.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 speF 12
2 speC 1

Product

# Product Occurence
1 ornithine decarboxylase SpeF 7
2 Arginine/lysine/ornithine decarboxylase 5
3 ornithine decarboxylase 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1982 13 E Amino acid transport and metabolism (E) Arginine/lysine/ornithine decarboxylase

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01276 13 Orn/Lys/Arg decarboxylase, major domain
PF03709 8 Orn/Lys/Arg decarboxylase, N-terminal domain
PF03711 13 Orn/Lys/Arg decarboxylase, C-terminal domain

Annotations of the 17 SwissProt hits

Annotation Number of occurrences
Arginine decarboxylase 4
Biodegradative arginine decarboxylase 1
Constitutive lysine decarboxylase 1
Constitutive ornithine decarboxylase 1
Inducible lysine decarboxylase 4
Inducible ornithine decarboxylase 2
Lysine decarboxylase 1
Lysine decarboxylase LdcA 1
Ornithine decarboxylase 1
Uncharacterized protein YaaO 1

Protein length

Min length 720
Max length 733
Mean length (sd) 722.5 (3.7)
Median length 720.0

Protein length distribution