Homologs in group_69

Help

12 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10865 FBDBKF_10865 93.1 Morganella morganii S1 speF ornithine decarboxylase SpeF
FBDBKF_18200 FBDBKF_18200 69.8 Morganella morganii S1 speF Arginine/lysine/ornithine decarboxylase
EHELCC_05360 EHELCC_05360 93.1 Morganella morganii S2 speF ornithine decarboxylase SpeF
EHELCC_18235 EHELCC_18235 69.8 Morganella morganii S2 speF Arginine/lysine/ornithine decarboxylase
NLDBIP_05680 NLDBIP_05680 93.1 Morganella morganii S4 speF ornithine decarboxylase SpeF
NLDBIP_18160 NLDBIP_18160 69.8 Morganella morganii S4 speF Arginine/lysine/ornithine decarboxylase
LHKJJB_02560 LHKJJB_02560 93.1 Morganella morganii S3 speF ornithine decarboxylase SpeF
LHKJJB_18355 LHKJJB_18355 69.8 Morganella morganii S3 speF Arginine/lysine/ornithine decarboxylase
HKOGLL_15940 HKOGLL_15940 93.1 Morganella morganii S5 speF ornithine decarboxylase SpeF
HKOGLL_18090 HKOGLL_18090 69.8 Morganella morganii S5 speF Arginine/lysine/ornithine decarboxylase
F4V73_RS01740 F4V73_RS01740 70.9 Morganella psychrotolerans speC ornithine decarboxylase
F4V73_RS11525 F4V73_RS11525 90.1 Morganella psychrotolerans speF ornithine decarboxylase SpeF

Distribution of the homologs in the orthogroup group_69

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_69

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P24169 0.0 1152 75 1 719 1 speF Inducible ornithine decarboxylase Escherichia coli (strain K12)
P44317 0.0 1082 70 1 718 3 speF Ornithine decarboxylase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P21169 0.0 1045 68 2 719 1 speC Constitutive ornithine decarboxylase Escherichia coli (strain K12)
P43099 0.0 872 56 4 717 1 odcI Inducible ornithine decarboxylase Lactobacillus sp. (strain 30a)
Q9I2S7 1.3e-122 386 35 11 667 1 ldcA Lysine decarboxylase LdcA Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P28629 1.36e-103 337 31 12 679 1 adiA Biodegradative arginine decarboxylase Escherichia coli (strain K12)
P05033 7.45e-99 323 32 17 670 3 None Lysine decarboxylase Hafnia alvei
P0A9H3 6.46e-98 320 34 15 614 1 cadA Inducible lysine decarboxylase Escherichia coli (strain K12)
P0A9H4 6.46e-98 320 34 15 614 3 cadA Inducible lysine decarboxylase Escherichia coli O157:H7
P0A1Z0 2.63e-96 316 33 14 619 3 cadA Inducible lysine decarboxylase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1Z1 2.63e-96 316 33 14 619 3 cadA Inducible lysine decarboxylase Salmonella typhi
P52095 6.19e-95 312 32 15 617 1 ldcC Constitutive lysine decarboxylase Escherichia coli (strain K12)
P21885 1.73e-24 111 24 20 568 1 speA Arginine decarboxylase Bacillus subtilis (strain 168)
Q81MS2 3.44e-20 98 23 21 566 3 speA Arginine decarboxylase Bacillus anthracis
Q9K9K5 3.23e-18 92 22 20 580 3 speA Arginine decarboxylase Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Q819L4 1.93e-17 89 23 22 564 3 speA Arginine decarboxylase Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
P37536 4.2e-10 66 24 13 304 3 yaaO Uncharacterized protein YaaO Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS01480
Feature type CDS
Gene speF
Product ornithine decarboxylase SpeF
Location 362663 - 364825 (strand: -1)
Length 2163 (nucleotides) / 720 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_69
Orthogroup size 13
N. genomes 7

Actions

Genomic region

Domains

PF01276 Orn/Lys/Arg decarboxylase, major domain
PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain
PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1982 Amino acid transport and metabolism (E) E Arginine/lysine/ornithine decarboxylase

Protein Sequence

MKSYKIAVSYDMSDYISTHRECVDILHTDFSDVAVIVISLNDIQNGKLNLIEQNSFEQPIFAIINKDEVIPANIINRLTGVIDLNKKNSELYNKQLETAALKYEESLLPPFFGSLKKYVEQGNSAFDCPGHQGGEFFRRHPLGNQFVEYFGENLFRSDLCNADVSMGDLLIHEGAPCAAQQHAAKVFNADKTYFVLNGTSSSNKVVLNALLAPDDLVLFDRNNHKSNHHGALIQAGATPVYLEAARNPFGFIGGIDAHCFEEKYLRELIKEVAPTRANEKRPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWVGYEQFIPMMKDCSPLLLELNENDPGILVTQSVHKQQAGFSQTSQIHKKDRHIKGQKRYVNHKRLNNAFMMHASTSPFYPLFAALDVNAKMHEGESGKRLWMNCVKTGIETRKLLLQSCKHIRPFIPETIDGRAWEDFDTDEIANDLRFFNFVPGERWHSFEGYEENQYFVDPCKLLLTTPGINAKTGKYESFGVPATILANYLRENNIIPEKCDLNSILFLLTPAESMAKMQHLVAQIARFEQLLEQDAPLKEVLPSVYHANQTRYQGYTIRQLCQEMHDMYVKFNVKQLQKEMFRKSHFPQVSMLPQEANIAFVRGEVELVAVEKIEGRIAAEGALPYPPGVLCVVPGEIWGGSVQQYFLALEEGINLFPGFSPELQGVYIRNDEDGRLRAYGYVIKH

Flanking regions ( +/- flanking 50bp)

TTTTACTTAATATTTCAGCGAGAATTTTTTACCAAAAAAAGGTATTAAAAATGAAAAGTTATAAAATAGCGGTCAGCTACGATATGTCTGACTATATTTCAACCCACCGTGAATGTGTCGATATTCTACATACTGATTTTTCTGATGTTGCCGTGATTGTTATTTCACTTAATGACATTCAGAATGGAAAGCTTAATTTAATTGAACAAAATAGCTTTGAACAGCCTATTTTTGCCATTATTAATAAAGATGAAGTTATCCCTGCTAATATTATTAATCGATTAACTGGTGTAATTGATTTAAATAAAAAAAATAGTGAGTTATATAATAAACAACTAGAAACTGCAGCGTTAAAATATGAAGAGAGTCTATTACCTCCTTTTTTCGGCAGCTTAAAAAAATACGTTGAACAAGGAAATTCAGCTTTTGATTGTCCTGGGCATCAAGGAGGTGAATTTTTCCGCCGTCATCCTCTAGGTAACCAATTTGTCGAGTATTTTGGTGAAAACTTATTCCGCTCTGATTTATGTAATGCCGATGTTTCTATGGGTGATCTGCTGATCCACGAAGGTGCCCCATGTGCCGCACAACAACATGCAGCAAAAGTCTTTAATGCCGATAAAACTTATTTCGTACTTAATGGTACATCTTCCTCCAATAAAGTCGTTCTTAATGCCTTATTGGCACCAGATGACCTAGTATTATTTGATCGTAATAATCATAAATCAAACCATCACGGAGCATTAATTCAAGCAGGAGCAACGCCTGTTTATCTTGAAGCTGCACGTAACCCATTTGGGTTTATCGGTGGGATTGATGCTCACTGTTTTGAAGAAAAATATCTTCGTGAACTCATCAAAGAAGTCGCCCCTACACGTGCAAATGAAAAGCGCCCTTTCCGCCTAGCCGTTATCCAATTAGGTACCTATGACGGAACAATATATAACGCACGTCAGGTAGTCGATAAAATCGGACATTTATGTGACTACATTTTATTTGACTCCGCGTGGGTGGGCTATGAACAGTTTATTCCAATGATGAAAGATTGTTCTCCACTTCTACTTGAACTGAATGAAAACGATCCGGGGATCTTAGTTACACAATCTGTACATAAACAACAAGCGGGATTCTCTCAAACCTCACAGATCCACAAAAAAGATCGCCATATTAAAGGTCAAAAACGCTATGTAAATCATAAACGTCTCAATAACGCCTTTATGATGCATGCCTCAACTAGTCCATTCTACCCATTATTTGCAGCTTTGGATGTGAATGCCAAAATGCATGAAGGTGAGTCAGGTAAACGTTTATGGATGAATTGCGTAAAAACAGGGATTGAAACCCGTAAATTACTCCTGCAATCCTGTAAACATATTCGCCCGTTTATTCCAGAAACTATCGATGGCCGTGCATGGGAAGATTTTGATACTGATGAAATTGCCAATGATCTCCGATTCTTTAATTTTGTTCCGGGAGAGCGCTGGCACTCATTTGAGGGATATGAAGAAAATCAATACTTTGTTGATCCATGTAAATTACTACTAACCACCCCAGGTATTAATGCCAAAACAGGAAAATATGAATCATTTGGTGTTCCTGCCACCATTTTGGCGAACTATCTACGTGAAAATAACATTATTCCTGAAAAATGCGATCTTAACTCCATATTATTCCTGCTAACGCCTGCAGAAAGCATGGCGAAAATGCAGCATCTGGTCGCACAAATTGCTCGCTTTGAACAATTACTGGAACAAGATGCCCCACTGAAAGAGGTACTTCCATCAGTATATCATGCCAACCAAACACGTTATCAAGGATACACCATCCGTCAATTGTGCCAAGAAATGCATGATATGTATGTGAAATTTAATGTAAAACAACTGCAAAAAGAGATGTTCCGTAAATCACATTTCCCACAAGTCAGTATGTTACCTCAAGAAGCCAATATCGCTTTTGTGCGTGGCGAGGTGGAGTTAGTTGCCGTGGAAAAAATTGAAGGCCGTATCGCCGCCGAAGGTGCTCTACCTTATCCACCAGGAGTACTGTGTGTAGTGCCAGGGGAAATTTGGGGTGGCTCTGTACAGCAATATTTTCTAGCGCTAGAAGAAGGAATTAATCTATTCCCGGGATTCTCACCGGAATTACAAGGTGTATATATCCGCAATGATGAGGACGGTCGTCTGCGGGCATATGGCTATGTAATTAAGCACTGAGTTAATTAATTTATGCGTGACGGAGTGTGAATAAGCATGCTCCGTCAGCC