Homologs in group_75

Help

12 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10865 FBDBKF_10865 91.9 Morganella morganii S1 speF ornithine decarboxylase SpeF
FBDBKF_18200 FBDBKF_18200 70.9 Morganella morganii S1 speF Arginine/lysine/ornithine decarboxylase
EHELCC_05360 EHELCC_05360 91.9 Morganella morganii S2 speF ornithine decarboxylase SpeF
EHELCC_18235 EHELCC_18235 70.9 Morganella morganii S2 speF Arginine/lysine/ornithine decarboxylase
NLDBIP_05680 NLDBIP_05680 91.9 Morganella morganii S4 speF ornithine decarboxylase SpeF
NLDBIP_18160 NLDBIP_18160 70.9 Morganella morganii S4 speF Arginine/lysine/ornithine decarboxylase
LHKJJB_02560 LHKJJB_02560 91.9 Morganella morganii S3 speF ornithine decarboxylase SpeF
LHKJJB_18355 LHKJJB_18355 70.9 Morganella morganii S3 speF Arginine/lysine/ornithine decarboxylase
HKOGLL_15940 HKOGLL_15940 91.9 Morganella morganii S5 speF ornithine decarboxylase SpeF
HKOGLL_18090 HKOGLL_18090 70.9 Morganella morganii S5 speF Arginine/lysine/ornithine decarboxylase
F4V73_RS01740 F4V73_RS01740 71.3 Morganella psychrotolerans speC ornithine decarboxylase
PMI_RS01480 PMI_RS01480 90.1 Proteus mirabilis HI4320 speF ornithine decarboxylase SpeF

Distribution of the homologs in the orthogroup group_75

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_75

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P24169 0.0 1125 73 1 719 1 speF Inducible ornithine decarboxylase Escherichia coli (strain K12)
P44317 0.0 1065 69 1 718 3 speF Ornithine decarboxylase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P21169 0.0 1015 66 2 719 1 speC Constitutive ornithine decarboxylase Escherichia coli (strain K12)
P43099 0.0 857 56 4 715 1 odcI Inducible ornithine decarboxylase Lactobacillus sp. (strain 30a)
Q9I2S7 9.26e-119 376 35 13 666 1 ldcA Lysine decarboxylase LdcA Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P05033 8.55e-97 318 32 15 631 3 None Lysine decarboxylase Hafnia alvei
P28629 1.01e-96 318 32 13 625 1 adiA Biodegradative arginine decarboxylase Escherichia coli (strain K12)
P0A9H3 3.18e-96 316 34 14 619 1 cadA Inducible lysine decarboxylase Escherichia coli (strain K12)
P0A9H4 3.18e-96 316 34 14 619 3 cadA Inducible lysine decarboxylase Escherichia coli O157:H7
P52095 2.94e-94 311 33 14 617 1 ldcC Constitutive lysine decarboxylase Escherichia coli (strain K12)
P0A1Z0 3.71e-94 310 32 13 613 3 cadA Inducible lysine decarboxylase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1Z1 3.71e-94 310 32 13 613 3 cadA Inducible lysine decarboxylase Salmonella typhi
P21885 1.11e-23 108 23 20 580 1 speA Arginine decarboxylase Bacillus subtilis (strain 168)
Q81MS2 7.57e-19 94 23 21 566 3 speA Arginine decarboxylase Bacillus anthracis
Q9K9K5 2.32e-17 89 23 22 580 3 speA Arginine decarboxylase Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Q819L4 1.07e-16 87 24 19 477 3 speA Arginine decarboxylase Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
P37536 2.72e-11 70 25 14 304 3 yaaO Uncharacterized protein YaaO Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS11525
Feature type CDS
Gene speF
Product ornithine decarboxylase SpeF
Location 452235 - 454397 (strand: 1)
Length 2163 (nucleotides) / 720 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_75
Orthogroup size 13
N. genomes 7

Actions

Genomic region

Domains

PF01276 Orn/Lys/Arg decarboxylase, major domain
PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain
PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1982 Amino acid transport and metabolism (E) E Arginine/lysine/ornithine decarboxylase

Protein Sequence

MNNYKFAVSYDMSDYIVTHRNSVDILSTEFTDVAVIIISLDDIQNGKLDFIEQHSFGQPVFAVIGQNDIIPAEIITRLTGVIDLNKNNGSLYSKQLETAALKYEESLLPPFFGSLKNYVEKGNSAFDCPGHQGGEFFRRHPLGNQFVEYFGENLFRSDLCNADVSMGDLLIHEGAPCAAQQHAAKVFNADKTYFVLNGTSSSNKVVLNALLAPGDLVLFDRNNHKSNHHGALIQAGATPIYLEAARNPFGFIGGIDAHCFEEDYLRDLIKEAAPARAGEKRPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWVGYEQFIPMMKDCSPLLLELNENDPGIMVTQSVHKQQAGFSQTSQIHKKDHHIKGQDRYVNHKRLNNAFMMHASTSPFYPLFAALDVNAKMHEGESGKRLWMDCVKTGIETRKLLLKSCSHIRPFIPETVDGRSWGEFDTDVIADDLRFFNFVPGERWHAFEGYAENQYFVDPCKLLLTTPGINAKTGNYDAFGVPATILANYLRENNIVPEKCDLNSILFLLTPAESMAKMQHLVAQIARFEQLLEQDAPLEVVLPSVYHANKTRYQGYSIRQLCQEMHDMYVKFNVKQLQKEMFRKAHFPEVSMLPQAANIEFVRGNVELVAVDQIEGCIAAEGALPYPPGVLCVIPGEIWGGSVQQYFLALEEGINLFPGFSPELQGVYIRSDEDGRQRAYGYVIRH

Flanking regions ( +/- flanking 50bp)

CTGAAAATATTTTAGCGGGAATTCTTTTGCGAAAAATATAGGTATTTAAAATGAATAATTATAAATTTGCTGTCAGCTATGATATGAGTGACTATATCGTCACGCACAGAAATAGTGTGGATATCTTAAGCACCGAATTTACTGATGTTGCTGTAATTATTATTTCTCTTGATGATATTCAGAATGGGAAATTAGATTTCATTGAACAGCATAGCTTTGGTCAGCCCGTTTTTGCGGTAATTGGTCAGAATGATATCATTCCGGCGGAGATCATTACACGCCTGACCGGTGTGATTGATTTAAATAAAAATAACGGTTCCCTGTACAGTAAGCAACTTGAGACAGCCGCACTGAAATATGAAGAAAGTTTATTGCCACCATTCTTCGGCAGTCTGAAAAACTATGTTGAGAAAGGTAATTCCGCATTTGATTGCCCGGGGCATCAGGGAGGTGAATTTTTTCGCCGTCATCCGCTGGGTAATCAGTTCGTTGAATATTTCGGTGAAAATCTGTTCCGCTCCGACTTGTGTAATGCCGATGTCTCTATGGGGGATTTATTAATTCACGAAGGCGCACCGTGCGCCGCGCAACAGCATGCAGCCAAAGTATTTAATGCAGATAAAACATATTTTGTCCTGAACGGGACATCGTCATCCAATAAAGTCGTTCTGAATGCCTTACTGGCACCGGGTGACCTGGTATTGTTTGACCGTAATAACCATAAATCAAACCACCATGGTGCATTAATTCAGGCAGGGGCGACACCAATCTATCTGGAAGCAGCACGTAACCCGTTTGGTTTTATCGGTGGTATTGATGCGCACTGCTTTGAAGAAGACTACCTGCGTGACTTAATTAAAGAAGCCGCACCGGCACGGGCGGGTGAAAAACGGCCGTTCCGTCTGGCTGTTATTCAACTGGGTACGTATGACGGTACAATTTATAATGCACGCCAGGTTGTTGATAAAATAGGTCATTTATGTGATTACATCTTATTTGATTCTGCCTGGGTGGGTTACGAACAATTCATTCCGATGATGAAAGATTGTTCTCCGCTGCTGCTGGAACTCAATGAAAACGATCCGGGCATAATGGTGACACAGTCAGTACACAAACAGCAGGCAGGCTTCTCCCAGACCTCACAAATCCATAAAAAAGATCACCATATCAAAGGTCAGGATCGCTATGTGAACCATAAGCGCCTGAATAATGCATTTATGATGCATGCGTCAACCAGTCCGTTCTATCCGTTATTTGCCGCACTGGATGTCAACGCCAAAATGCATGAAGGCGAATCCGGTAAACGCTTATGGATGGACTGCGTTAAAACCGGGATCGAAACCCGTAAATTATTACTGAAATCATGCAGCCATATCCGTCCGTTTATCCCTGAGACTGTTGACGGACGTTCATGGGGCGAATTTGATACTGATGTGATTGCTGATGATCTGAGATTTTTTAACTTTGTGCCGGGTGAACGCTGGCATGCCTTTGAAGGTTATGCAGAAAATCAGTATTTTGTTGATCCCTGCAAGCTGCTGCTGACCACCCCGGGTATTAATGCCAAAACGGGAAACTATGATGCATTCGGTGTACCTGCAACTATCCTCGCAAATTATTTACGTGAAAATAATATTGTCCCTGAGAAATGCGACCTTAACTCAATCCTTTTCCTGCTGACACCTGCTGAAAGCATGGCAAAAATGCAGCACTTAGTGGCACAAATTGCACGCTTTGAACAACTTCTGGAGCAGGATGCCCCGCTGGAAGTCGTTCTGCCGTCTGTGTATCACGCAAACAAAACCCGTTATCAGGGATACAGCATCCGTCAGTTATGTCAGGAAATGCATGACATGTACGTGAAATTCAATGTGAAACAGCTCCAGAAAGAGATGTTCCGTAAGGCGCACTTCCCTGAGGTAAGTATGTTACCGCAGGCCGCCAATATTGAATTTGTCCGCGGTAATGTTGAATTGGTTGCCGTTGATCAGATAGAAGGATGCATTGCGGCAGAAGGCGCTCTGCCTTACCCGCCGGGAGTGCTGTGTGTTATTCCGGGGGAAATTTGGGGCGGTTCTGTTCAGCAGTATTTCCTTGCGCTGGAAGAAGGTATCAACCTGTTCCCGGGATTCTCACCGGAATTGCAGGGTGTGTATATCCGCAGCGATGAAGATGGTCGTCAGCGGGCATACGGCTATGTAATCAGACACTAAGTTTGCTAATACTTGCATGGCGGGGCAGGGATTAGCATGTCCCGCCATCC