COG1982


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1982, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Arginine/lysine/ornithine decarboxylase
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG1982 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_75 FBDBKF_10865 708 2870 1 speF ornithine decarboxylase SpeF Morganella morganii S1
1 group_75 FBDBKF_18200 5447 7621 1 speF Arginine/lysine/ornithine decarboxylase Morganella morganii S1
2 group_75 EHELCC_05360 56598 58760 -1 speF ornithine decarboxylase SpeF Morganella morganii S2
3 group_75 EHELCC_18235 5320 7494 1 speF Arginine/lysine/ornithine decarboxylase Morganella morganii S2
4 group_75 NLDBIP_05680 97663 99825 -1 speF ornithine decarboxylase SpeF Morganella morganii S4
5 group_75 NLDBIP_18160 5521 7695 1 speF Arginine/lysine/ornithine decarboxylase Morganella morganii S4
6 group_75 LHKJJB_02560 75187 77349 -1 speF ornithine decarboxylase SpeF Morganella morganii S3
7 group_75 LHKJJB_18355 5359 7533 1 speF Arginine/lysine/ornithine decarboxylase Morganella morganii S3
8 group_75 HKOGLL_15940 98627 100789 -1 speF ornithine decarboxylase SpeF Morganella morganii S5
9 group_75 HKOGLL_18090 5337 7511 1 speF Arginine/lysine/ornithine decarboxylase Morganella morganii S5
10 group_75 F4V73_RS01740 385315 387516 1 speC ornithine decarboxylase Morganella psychrotolerans
11 group_75 F4V73_RS11525 452235 454397 1 speF ornithine decarboxylase SpeF Morganella psychrotolerans
12 group_75 PMI_RS01480 362663 364825 -1 speF ornithine decarboxylase SpeF Proteus mirabilis HI4320