Homologs in group_2981

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16965 FBDBKF_16965 100.0 Morganella morganii S1 rtcB RNA ligase RtcB family protein
EHELCC_16625 EHELCC_16625 100.0 Morganella morganii S2 rtcB RNA ligase RtcB family protein
LHKJJB_16635 LHKJJB_16635 100.0 Morganella morganii S3 rtcB RNA ligase RtcB family protein
HKOGLL_17600 HKOGLL_17600 100.0 Morganella morganii S5 rtcB RNA ligase RtcB family protein
PMI_RS17450 PMI_RS17450 66.9 Proteus mirabilis HI4320 - RNA ligase RtcB family protein

Distribution of the homologs in the orthogroup group_2981

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2981

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0DX91 1.74e-170 483 62 0 375 1 rtcB2 RNA-splicing ligase RtcB2 Escherichia coli (strain ATCC 25922 / DSM 1103 / LMG 8223 / NCIMB 12210 / NCTC 12241 / WDCM 00013 / Seattle 1946)
O29399 7.26e-35 137 29 18 453 3 rtcB tRNA-splicing ligase RtcB Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q7RI54 7.35e-34 134 26 18 443 3 PY03776 RNA-splicing ligase RtcB homolog Plasmodium yoelii yoelii
Q54Y09 2.5e-33 133 28 19 445 3 DDB_G0278481 RNA-splicing ligase RtcB homolog Dictyostelium discoideum
Q4YUZ9 4.07e-33 132 26 18 443 3 RTCB RNA-splicing ligase RtcB homolog Plasmodium berghei (strain Anka)
B0EAV2 1.85e-32 130 25 13 439 3 EDI_022970 RNA-splicing ligase RtcB homolog 1 Entamoeba dispar (strain ATCC PRA-260 / SAW760)
A9UXG6 2.18e-32 130 28 18 443 3 24995 RNA-splicing ligase RtcB homolog Monosiga brevicollis
P90838 3.36e-32 129 27 18 443 1 rtcb-1 RNA-splicing ligase RtcB homolog Caenorhabditis elegans
Q8IIU6 2.68e-31 127 27 20 443 3 RTCB RNA-splicing ligase RtcB homolog Plasmodium falciparum (isolate 3D7)
C1E9Y5 2.76e-31 127 26 19 443 3 MICPUN_59883 RNA-splicing ligase RtcB homolog Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709)
Q74MJ0 3.62e-31 126 28 16 440 3 rtcB tRNA-splicing ligase RtcB Nanoarchaeum equitans (strain Kin4-M)
C1MI97 6.33e-31 126 27 19 443 3 MICPUCDRAFT_24370 RNA-splicing ligase RtcB homolog Micromonas pusilla (strain CCMP1545)
C4M6T2 8.35e-31 126 26 16 440 3 EHI_184560 RNA-splicing ligase RtcB homolog 2 Entamoeba histolytica (strain ATCC 30459 / HM-1:IMSS / ABRM)
Q6LXF9 8.77e-31 125 27 18 443 3 rtcB tRNA-splicing ligase RtcB Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL)
B3L4K9 1e-30 125 27 18 442 3 PKH_090290 RNA-splicing ligase RtcB homolog Plasmodium knowlesi (strain H)
A7RKF6 2.15e-30 124 26 18 442 3 v1g198406 RNA-splicing ligase RtcB homolog Nematostella vectensis
Q561P3 3.99e-30 124 27 18 443 2 rtcb RNA-splicing ligase RtcB homolog Xenopus tropicalis
P0DX92 4.55e-30 122 27 14 408 1 rtcB1 RNA-splicing ligase RtcB1 Escherichia coli (strain ATCC 25922 / DSM 1103 / LMG 8223 / NCIMB 12210 / NCTC 12241 / WDCM 00013 / Seattle 1946)
P46850 6.33e-30 122 27 13 408 1 rtcB RNA-splicing ligase RtcB Escherichia coli (strain K12)
A9CB42 8.16e-30 123 27 19 443 3 RTCB RNA-splicing ligase RtcB homolog Papio anubis
Q4R6X4 8.16e-30 123 27 19 443 2 RTCB RNA-splicing ligase RtcB homolog Macaca fascicularis
Q6NZS4 1.04e-29 122 27 18 443 2 rtcb RNA-splicing ligase RtcB homolog Danio rerio
C3YN79 1.16e-29 122 26 16 443 3 BRAFLDRAFT_216547 RNA-splicing ligase RtcB homolog Branchiostoma floridae
Q5JCZ1 2.42e-29 121 27 15 441 3 rtcB tRNA-splicing ligase RtcB Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
O27634 3.16e-29 121 27 17 454 3 rtcB tRNA-splicing ligase RtcB Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Q6AYT3 3.41e-29 121 27 19 443 2 Rtcb RNA-splicing ligase RtcB homolog Rattus norvegicus
Q99LF4 3.41e-29 121 27 19 443 1 Rtcb RNA-splicing ligase RtcB homolog Mus musculus
Q19PY3 3.65e-29 121 27 19 443 2 RTCB RNA-splicing ligase RtcB homolog Sus scrofa
Q9Y3I0 3.84e-29 121 27 19 443 1 RTCB RNA-splicing ligase RtcB homolog Homo sapiens
Q5E9T9 3.87e-29 121 27 19 443 2 RTCB RNA-splicing ligase RtcB homolog Bos taurus
B3RID0 4.29e-29 121 26 18 444 3 TRIADDRAFT_18395 RNA-splicing ligase RtcB homolog Trichoplax adhaerens
Q7Q412 5.14e-29 120 26 20 442 3 AGAP008147 RNA-splicing ligase RtcB homolog Anopheles gambiae
A4S3S3 4.15e-28 118 26 18 445 3 OSTLU_25152 RNA-splicing ligase RtcB homolog Ostreococcus lucimarinus (strain CCE9901)
A8JC00 6.89e-28 117 26 18 443 3 CHLREDRAFT_139581 RNA-splicing ligase RtcB homolog Chlamydomonas reinhardtii
A8QC60 1.23e-27 117 26 19 444 3 Bm1_49220 RNA-splicing ligase RtcB homolog Brugia malayi
Q00ZY2 1.49e-27 117 26 18 445 3 Ot10g01930 RNA-splicing ligase RtcB homolog Ostreococcus tauri
B0WCT9 2.42e-27 116 26 21 443 3 CPIJ004874 RNA-splicing ligase RtcB homolog 1 Culex quinquefasciatus
Q9VIW7 2.72e-26 113 26 18 443 2 RtcB RNA-splicing ligase RtcB homolog Drosophila melanogaster
B8LBM8 7.94e-26 111 28 20 443 3 THAPSDRAFT_41953 RNA-splicing ligase RtcB homolog Thalassiosira pseudonana
Q9YB37 1.34e-25 110 27 18 417 3 rtcB tRNA-splicing ligase RtcB Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
Q8ZY09 1.23e-24 108 26 23 487 1 rtcB tRNA-splicing ligase RtcB Pyrobaculum aerophilum (strain ATCC 51768 / DSM 7523 / JCM 9630 / CIP 104966 / NBRC 100827 / IM2)
P75675 2.57e-24 98 69 0 69 5 ykfJ Putative uncharacterized protein YkfJ Escherichia coli (strain K12)
P9WGW4 4.48e-24 106 32 9 283 2 rtcB RNA-splicing ligase RtcB Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P9WGW5 4.53e-24 106 32 9 283 2 rtcB RNA-splicing ligase RtcB Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P59975 4.53e-24 106 32 9 283 3 rtcB RNA-splicing ligase RtcB Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
Q8X7P0 8.23e-24 97 69 0 68 4 ykfJ Uncharacterized protein YkfJ Escherichia coli O157:H7
Q17FP1 1.51e-23 105 26 21 445 3 AAEL003336 RNA-splicing ligase RtcB homolog Aedes aegypti
Q58095 1.88e-23 105 30 13 304 3 rtcB tRNA-splicing ligase RtcB Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
C4M244 4.43e-22 100 24 17 454 3 EHI_169260 RNA-splicing ligase RtcB homolog 1 Entamoeba histolytica (strain ATCC 30459 / HM-1:IMSS / ABRM)
Q8U0H4 7.48e-22 100 30 8 287 3 rtcB tRNA-splicing ligase RtcB Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Q4N1R8 8.66e-22 100 25 19 454 3 TP04_0661 RNA-splicing ligase RtcB homolog Theileria parva
B0EIW5 8.37e-21 97 23 16 455 3 EDI_260790 RNA-splicing ligase RtcB homolog 2 Entamoeba dispar (strain ATCC PRA-260 / SAW760)
O59245 5.52e-20 95 29 9 289 1 rtcB tRNA-splicing ligase RtcB Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q9V168 7.51e-20 95 30 11 288 3 rtcB tRNA-splicing ligase RtcB Pyrococcus abyssi (strain GE5 / Orsay)
Q4U923 2.34e-19 92 24 20 462 3 TA10620 RNA-splicing ligase RtcB homolog Theileria annulata
B0XKF3 9.1e-19 91 25 20 397 3 CPIJ019543 RNA-splicing ligase RtcB homolog 2 Culex quinquefasciatus
Q8TUS2 2.98e-16 84 29 11 298 1 rtcB tRNA-splicing ligase RtcB Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_16835
Feature type CDS
Gene rtcB
Product RNA ligase RtcB family protein
Location 46676 - 47812 (strand: -1)
Length 1137 (nucleotides) / 378 (amino acids)

Contig

Accession ZDB_534
Length 68509 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2981
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF01139 tRNA-splicing ligase RtcB

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1690 Translation, ribosomal structure and biogenesis (J) J RNA-splicing ligase RtcB, repairs tRNA damage

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K18148 release factor H-coupled RctB family protein beta-Lactam resistance -

Protein Sequence

MGNYMHFVAPGVSYIASDATWIESNAIQQLITTAQLPGMTAVAGMPDLHPGRGYPVGAAFFSEGRFYPALVGNDIGCGMALYQTELKVSKLNADKAEKQLRSMHDHADADWLAEHVSDHFASHPFAASLSSVGGGNHFAEFQQIDKVCDDGLFAASGLDKHRVILLVHSGSRGLGQMILRHHVEQFSHDGLTENTPEAAEYLAAHQQALDFAQHNRALIALRMMQQLRTNGEAILDINHNLVEASTVNGRNGWLHRKGATPVDHDYVVIPGSRGDYSYLVKPHATADSLYSLAHGAGRKWMRTECKGRLSHRYTPAQLSRTDLGSRVICANKQLIYEEAPQSYKSIETVIESLSGAGLITVVARLKPLLTYKTSGECC

Flanking regions ( +/- flanking 50bp)

CCTGACTGCCCGCCATAAACCCGAATTTTCACTATTTTCCGGAATGGATTATGGGCAATTATATGCATTTTGTCGCGCCGGGCGTCTCTTATATCGCCTCGGATGCGACGTGGATCGAAAGTAACGCGATTCAACAACTGATCACCACCGCACAATTACCGGGTATGACGGCAGTTGCCGGTATGCCGGACCTGCATCCCGGCAGAGGCTATCCGGTGGGTGCGGCATTTTTCTCTGAAGGCCGTTTTTATCCCGCGCTGGTCGGTAACGACATCGGCTGCGGTATGGCGCTGTATCAGACTGAGCTGAAAGTCAGCAAACTCAACGCGGACAAAGCTGAAAAGCAACTGCGCAGCATGCATGACCATGCGGACGCAGACTGGCTGGCAGAGCATGTGAGCGATCACTTCGCATCACATCCGTTTGCCGCTTCTCTGTCTTCTGTCGGCGGCGGGAATCATTTTGCTGAGTTTCAGCAAATCGATAAGGTCTGTGATGACGGGCTGTTTGCCGCGTCCGGGCTGGATAAACATCGTGTGATACTGCTGGTTCACAGCGGTTCACGCGGGCTGGGGCAGATGATTCTGCGTCATCATGTTGAGCAGTTCAGCCACGACGGGCTGACAGAGAACACGCCTGAAGCGGCGGAATATCTGGCAGCACATCAGCAGGCGCTGGATTTTGCACAGCACAACCGGGCGCTGATTGCACTGCGGATGATGCAGCAGTTGCGTACCAACGGTGAGGCAATACTCGATATCAATCACAACCTGGTGGAAGCCAGCACGGTGAACGGCCGTAACGGCTGGCTGCACCGGAAAGGGGCAACCCCGGTGGATCATGATTATGTGGTGATCCCCGGCTCACGCGGTGATTACAGTTATCTGGTGAAACCACATGCAACCGCTGACAGCCTTTACTCTCTCGCGCACGGCGCGGGACGTAAATGGATGCGCACCGAGTGCAAAGGACGCCTTTCTCACCGCTATACCCCGGCGCAGTTATCCCGTACCGATCTCGGCAGCCGGGTGATCTGCGCTAATAAGCAGCTGATTTATGAGGAAGCACCGCAGTCCTATAAATCCATTGAGACTGTGATTGAAAGCCTGTCAGGTGCCGGGCTGATTACCGTGGTGGCGCGGCTGAAACCGTTGCTGACCTACAAAACGAGCGGGGAGTGCTGCTGATGTTATTACAGTTTTCTGCCGCTCACGGCCCGGAAGAGTGCTGTCTGGCG