Homologs in group_2981

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16965 FBDBKF_16965 66.9 Morganella morganii S1 rtcB RNA ligase RtcB family protein
EHELCC_16625 EHELCC_16625 66.9 Morganella morganii S2 rtcB RNA ligase RtcB family protein
NLDBIP_16835 NLDBIP_16835 66.9 Morganella morganii S4 rtcB RNA ligase RtcB family protein
LHKJJB_16635 LHKJJB_16635 66.9 Morganella morganii S3 rtcB RNA ligase RtcB family protein
HKOGLL_17600 HKOGLL_17600 66.9 Morganella morganii S5 rtcB RNA ligase RtcB family protein

Distribution of the homologs in the orthogroup group_2981

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2981

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0DX91 2.1e-168 478 60 0 375 1 rtcB2 RNA-splicing ligase RtcB2 Escherichia coli (strain ATCC 25922 / DSM 1103 / LMG 8223 / NCIMB 12210 / NCTC 12241 / WDCM 00013 / Seattle 1946)
Q74MJ0 5.39e-35 137 29 23 457 3 rtcB tRNA-splicing ligase RtcB Nanoarchaeum equitans (strain Kin4-M)
P46850 1.22e-33 132 28 17 411 1 rtcB RNA-splicing ligase RtcB Escherichia coli (strain K12)
P0DX92 5.65e-33 130 28 17 415 1 rtcB1 RNA-splicing ligase RtcB1 Escherichia coli (strain ATCC 25922 / DSM 1103 / LMG 8223 / NCIMB 12210 / NCTC 12241 / WDCM 00013 / Seattle 1946)
O27634 3.66e-32 129 27 16 440 3 rtcB tRNA-splicing ligase RtcB Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Q6LXF9 3.39e-31 126 26 15 445 3 rtcB tRNA-splicing ligase RtcB Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL)
Q5JCZ1 1.02e-30 125 27 19 444 3 rtcB tRNA-splicing ligase RtcB Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
Q8ZY09 1.92e-30 124 27 20 424 1 rtcB tRNA-splicing ligase RtcB Pyrobaculum aerophilum (strain ATCC 51768 / DSM 7523 / JCM 9630 / CIP 104966 / NBRC 100827 / IM2)
O29399 7.65e-30 123 26 19 441 3 rtcB tRNA-splicing ligase RtcB Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q4YUZ9 1.17e-29 122 27 18 442 3 RTCB RNA-splicing ligase RtcB homolog Plasmodium berghei (strain Anka)
Q9YB37 2.01e-29 121 26 16 421 3 rtcB tRNA-splicing ligase RtcB Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
Q54Y09 2.56e-29 121 27 20 448 3 DDB_G0278481 RNA-splicing ligase RtcB homolog Dictyostelium discoideum
B0EAV2 3.3e-29 121 26 15 443 3 EDI_022970 RNA-splicing ligase RtcB homolog 1 Entamoeba dispar (strain ATCC PRA-260 / SAW760)
P9WGW5 8.75e-29 119 27 15 435 2 rtcB RNA-splicing ligase RtcB Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P59975 8.75e-29 119 27 15 435 3 rtcB RNA-splicing ligase RtcB Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P9WGW4 9.96e-29 119 27 15 435 2 rtcB RNA-splicing ligase RtcB Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q7RI54 1.35e-28 119 26 18 442 3 PY03776 RNA-splicing ligase RtcB homolog Plasmodium yoelii yoelii
B3L4K9 2e-28 119 25 17 466 3 PKH_090290 RNA-splicing ligase RtcB homolog Plasmodium knowlesi (strain H)
Q8IIU6 3.09e-28 118 27 18 442 3 RTCB RNA-splicing ligase RtcB homolog Plasmodium falciparum (isolate 3D7)
P90838 1.51e-27 116 26 17 444 1 rtcb-1 RNA-splicing ligase RtcB homolog Caenorhabditis elegans
C4M6T2 2.84e-27 116 25 14 438 3 EHI_184560 RNA-splicing ligase RtcB homolog 2 Entamoeba histolytica (strain ATCC 30459 / HM-1:IMSS / ABRM)
Q6AYT3 4.02e-27 115 26 19 443 2 Rtcb RNA-splicing ligase RtcB homolog Rattus norvegicus
Q99LF4 4.02e-27 115 26 19 443 1 Rtcb RNA-splicing ligase RtcB homolog Mus musculus
A8JC00 5.11e-27 115 24 19 445 3 CHLREDRAFT_139581 RNA-splicing ligase RtcB homolog Chlamydomonas reinhardtii
A7RKF6 5.12e-27 115 25 17 443 3 v1g198406 RNA-splicing ligase RtcB homolog Nematostella vectensis
A9UXG6 5.31e-27 115 27 20 443 3 24995 RNA-splicing ligase RtcB homolog Monosiga brevicollis
A9CB42 5.64e-27 115 26 18 443 3 RTCB RNA-splicing ligase RtcB homolog Papio anubis
Q4R6X4 5.64e-27 115 26 18 443 2 RTCB RNA-splicing ligase RtcB homolog Macaca fascicularis
Q19PY3 6.71e-27 115 26 18 443 2 RTCB RNA-splicing ligase RtcB homolog Sus scrofa
Q5E9T9 6.84e-27 114 26 18 443 2 RTCB RNA-splicing ligase RtcB homolog Bos taurus
Q9Y3I0 7.25e-27 114 26 18 443 1 RTCB RNA-splicing ligase RtcB homolog Homo sapiens
Q4N1R8 1.09e-26 114 24 18 446 3 TP04_0661 RNA-splicing ligase RtcB homolog Theileria parva
C1E9Y5 1.29e-26 114 25 18 444 3 MICPUN_59883 RNA-splicing ligase RtcB homolog Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709)
B3RID0 1.48e-26 114 26 18 444 3 TRIADDRAFT_18395 RNA-splicing ligase RtcB homolog Trichoplax adhaerens
A8QC60 1.7e-26 114 26 20 444 3 Bm1_49220 RNA-splicing ligase RtcB homolog Brugia malayi
P75675 2.56e-26 103 72 0 69 5 ykfJ Putative uncharacterized protein YkfJ Escherichia coli (strain K12)
Q6NZS4 5.29e-26 112 26 19 443 2 rtcb RNA-splicing ligase RtcB homolog Danio rerio
C3YN79 6.63e-26 112 24 16 443 3 BRAFLDRAFT_216547 RNA-splicing ligase RtcB homolog Branchiostoma floridae
Q8X7P0 1.11e-25 102 72 0 68 4 ykfJ Uncharacterized protein YkfJ Escherichia coli O157:H7
Q7Q412 1.25e-25 111 26 20 445 3 AGAP008147 RNA-splicing ligase RtcB homolog Anopheles gambiae
Q561P3 3.76e-25 109 26 19 444 2 rtcb RNA-splicing ligase RtcB homolog Xenopus tropicalis
Q58095 5.19e-25 110 30 10 287 3 rtcB tRNA-splicing ligase RtcB Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
C4M244 6.52e-25 109 25 16 442 3 EHI_169260 RNA-splicing ligase RtcB homolog 1 Entamoeba histolytica (strain ATCC 30459 / HM-1:IMSS / ABRM)
B0WCT9 9.3e-25 108 26 19 442 3 CPIJ004874 RNA-splicing ligase RtcB homolog 1 Culex quinquefasciatus
B0EIW5 1.76e-24 108 25 16 443 3 EDI_260790 RNA-splicing ligase RtcB homolog 2 Entamoeba dispar (strain ATCC PRA-260 / SAW760)
Q4U923 2.57e-24 107 24 19 454 3 TA10620 RNA-splicing ligase RtcB homolog Theileria annulata
C1MI97 3e-24 107 26 19 445 3 MICPUCDRAFT_24370 RNA-splicing ligase RtcB homolog Micromonas pusilla (strain CCMP1545)
B8LBM8 1.78e-23 104 25 18 465 3 THAPSDRAFT_41953 RNA-splicing ligase RtcB homolog Thalassiosira pseudonana
Q9VIW7 2.26e-23 104 25 19 442 2 RtcB RNA-splicing ligase RtcB homolog Drosophila melanogaster
Q00ZY2 8.47e-22 100 25 18 446 3 Ot10g01930 RNA-splicing ligase RtcB homolog Ostreococcus tauri
Q17FP1 1e-21 100 26 19 442 3 AAEL003336 RNA-splicing ligase RtcB homolog Aedes aegypti
A4S3S3 1.69e-21 99 24 18 446 3 OSTLU_25152 RNA-splicing ligase RtcB homolog Ostreococcus lucimarinus (strain CCE9901)
Q8U0H4 2.41e-20 96 28 10 287 3 rtcB tRNA-splicing ligase RtcB Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Q9V168 6.36e-20 95 28 10 286 3 rtcB tRNA-splicing ligase RtcB Pyrococcus abyssi (strain GE5 / Orsay)
O59245 1.45e-19 94 27 10 287 1 rtcB tRNA-splicing ligase RtcB Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q8TUS2 5.73e-18 89 29 11 300 1 rtcB tRNA-splicing ligase RtcB Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
B0XKF3 3.36e-16 83 26 18 382 3 CPIJ019543 RNA-splicing ligase RtcB homolog 2 Culex quinquefasciatus

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS17450
Feature type CDS
Gene -
Product RNA ligase RtcB family protein
Location 3830079 - 3831215 (strand: -1)
Length 1137 (nucleotides) / 378 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2981
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF01139 tRNA-splicing ligase RtcB

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1690 Translation, ribosomal structure and biogenesis (J) J RNA-splicing ligase RtcB, repairs tRNA damage

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K18148 release factor H-coupled RctB family protein beta-Lactam resistance -

Protein Sequence

MDKCVHYLSDRVCYIASDKTWIESKAIQQLVTTAQLPEMAYVTGMPDLHPGRGYPIGAVFFSVNRFYPALVGNDIGCGMTLFQTEFNHSKLNLDKIEKKLSEMSDIAPIEWLIDNLPADMQNHPFAHSLGSIGGGNHFAEFQQIDQVINQALFTNSGINKKQLLLLVHSGSRGLGQSILRAHTEQFGHQGLVANTDAANDYLQAHDHALNYAKLNRHLIGHRMMEQIHTQGTVITDVNHNLVEPCELYNQQGWLHRKGATPAHHEIVVIPGSRGDHSYLVKPIISELSLHSLPHGAGRKWMRTECKGRLSHRFTPLQLSRTALGSRIICANKQLIYEEAPQSYKSIETVIESMRSLGLIEVIARLKPVITYKTSGEIA

Flanking regions ( +/- flanking 50bp)

TGTCCGCCAATCACGTTATTTTTTATCCTTTACAATATATGGATTGGAATATGGACAAGTGTGTTCATTATTTATCTGATCGCGTTTGTTATATCGCCTCAGATAAAACTTGGATTGAAAGTAAAGCAATCCAACAACTAGTAACAACCGCTCAACTTCCTGAAATGGCTTATGTCACTGGCATGCCAGACTTACATCCCGGTCGTGGTTATCCCATTGGAGCGGTTTTTTTTTCTGTTAACCGTTTTTACCCTGCTTTAGTCGGTAATGACATTGGCTGTGGTATGACACTGTTTCAAACAGAATTTAACCATAGCAAACTCAATTTAGATAAAATAGAAAAAAAATTGAGCGAAATGAGTGATATCGCGCCCATCGAATGGTTGATAGATAATTTACCTGCAGATATGCAAAATCATCCATTTGCTCACTCATTAGGCTCTATTGGTGGTGGAAATCACTTTGCTGAATTCCAACAAATTGACCAAGTTATTAATCAAGCATTGTTTACAAACAGTGGTATTAATAAAAAACAATTATTGCTATTGGTGCATAGTGGTTCACGTGGTTTAGGGCAATCTATTTTACGTGCTCACACAGAGCAATTTGGCCATCAAGGATTGGTCGCGAATACAGACGCTGCCAATGACTACTTACAAGCCCATGACCATGCTCTTAATTATGCTAAGCTCAATCGCCACTTGATTGGCCATAGAATGATGGAACAAATTCATACACAAGGAACGGTTATTACTGATGTTAACCATAATCTGGTAGAGCCTTGCGAATTATATAATCAACAAGGATGGTTACATCGCAAAGGGGCGACGCCCGCTCATCACGAAATTGTGGTTATTCCTGGTTCACGTGGTGATCACAGTTATCTCGTTAAGCCTATTATCTCTGAATTAAGCCTTCATTCTCTACCACATGGTGCGGGTAGAAAGTGGATGCGAACGGAGTGTAAAGGCCGTTTATCACATCGATTTACGCCATTACAGCTCTCACGCACAGCACTAGGTAGCCGTATTATTTGTGCTAATAAACAATTAATTTATGAGGAAGCGCCTCAATCGTATAAATCAATTGAAACTGTTATAGAAAGTATGAGGAGTCTTGGTTTAATTGAGGTTATCGCCCGCTTAAAACCGGTTATTACTTATAAAACCAGTGGGGAGATAGCATAATGTTATTACAATTTTCTTCAGCACAAGGCCCCGAAGAATGCTGTATAGCG