Orthogroup:group_2981


Homologs in group_2981

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_16965 FBDBKF_16965 Morganella morganii S1 rtcB RNA ligase RtcB family protein
EHELCC_16625 EHELCC_16625 Morganella morganii S2 rtcB RNA ligase RtcB family protein
NLDBIP_16835 NLDBIP_16835 Morganella morganii S4 rtcB RNA ligase RtcB family protein
LHKJJB_16635 LHKJJB_16635 Morganella morganii S3 rtcB RNA ligase RtcB family protein
HKOGLL_17600 HKOGLL_17600 Morganella morganii S5 rtcB RNA ligase RtcB family protein
PMI_RS17450 PMI_RS17450 Proteus mirabilis HI4320 - RNA ligase RtcB family protein

Distribution of group_2981 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2981 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2981

Orthogroup content: 6 members

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This page summarizes the annotation of all members of the orthologous group group_2981.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rtcB 5
2 - 1

Product

# Product Occurence
1 RNA ligase RtcB family protein 6

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1690 6 J Translation, ribosomal structure and biogenesis (J) RNA-splicing ligase RtcB, repairs tRNA damage

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K18148 6 release factor H-coupled RctB family protein beta-Lactam resistance -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01139 6 tRNA-splicing ligase RtcB

Annotations of the 57 SwissProt hits

Annotation Number of occurrences
Putative uncharacterized protein YkfJ 1
RNA-splicing ligase RtcB 4
RNA-splicing ligase RtcB homolog 31
RNA-splicing ligase RtcB homolog 1 3
RNA-splicing ligase RtcB homolog 2 3
RNA-splicing ligase RtcB1 1
RNA-splicing ligase RtcB2 1
Uncharacterized protein YkfJ 1
tRNA-splicing ligase RtcB 12

Protein length

Unique protein length 378

Protein length distribution