Homologs in group_1292

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07865 FBDBKF_07865 100.0 Morganella morganii S1 lys9 diaminopimelate dehydrogenase
EHELCC_13695 EHELCC_13695 100.0 Morganella morganii S2 lys9 diaminopimelate dehydrogenase
LHKJJB_08710 LHKJJB_08710 100.0 Morganella morganii S3 lys9 diaminopimelate dehydrogenase
HKOGLL_08260 HKOGLL_08260 100.0 Morganella morganii S5 lys9 diaminopimelate dehydrogenase
F4V73_RS13155 F4V73_RS13155 90.6 Morganella psychrotolerans - diaminopimelate dehydrogenase
PMI_RS00725 PMI_RS00725 74.4 Proteus mirabilis HI4320 - diaminopimelate dehydrogenase

Distribution of the homologs in the orthogroup group_1292

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1292

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q5L9Q6 4.8e-141 403 63 2 301 1 ddh Meso-diaminopimelate D-dehydrogenase Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / LMG 10263 / NCTC 9343 / Onslow / VPI 2553 / EN-2)
A3DDX7 2.36e-40 147 33 9 317 1 ddh Meso-diaminopimelate D-dehydrogenase Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372)
Q9KWR0 4.92e-37 138 33 8 306 1 dapdh Meso-diaminopimelate D-dehydrogenase Lysinibacillus sphaericus
G1UII1 1.13e-35 134 33 9 310 1 ddh Meso-diaminopimelate D-dehydrogenase Ureibacillus thermosphaericus
P04964 3.57e-28 114 29 12 327 1 ddh Meso-diaminopimelate D-dehydrogenase Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_14140
Feature type CDS
Gene lys9
Product diaminopimelate dehydrogenase
Location 96679 - 97638 (strand: 1)
Length 960 (nucleotides) / 319 (amino acids)

Contig

Accession ZDB_529
Length 159829 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1292
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01408 Oxidoreductase family, NAD-binding Rossmann fold
PF16654 Diaminopimelic acid dehydrogenase C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0673 General function prediction only (R) R Predicted dehydrogenase

Kegg Ortholog Annotation(s)

Protein Sequence

MFPFINKYDFLIRLINDDRENSVKKIRAAVVGYGNIGQYAIEALEAAADFEIAGIVRRNPSAADTDSVYPVVADIRELGKVDVALLCSPTRAIRAVASEILALGINTVDSFDVHSEIVALKEHLDPIARAGECTAIISAGWDPGSDSIIRTLMQAMAPKGLTYTNFGPGMSMGHSVAAKAIPGVKDALSMTIPLGTGVHRRMVYVELEPGHDIDTVTAALKADSYFASDETHVRQVDSVDALKDVGHGVSMTHKGVSGKTHNQLFEYSMRINNPALTSQFMVSAARATCRQQPGAYSVIEIPPVNFLAGDINSWISKLV

Flanking regions ( +/- flanking 50bp)

AGCGAAAGGTGAAAAATAAAACATTTTTTTCATAACTAATTAAGAAATCAATGTTTCCTTTCATAAATAAGTATGATTTCCTTATCAGACTAATCAATGATGACAGAGAGAATTCCGTGAAAAAAATACGAGCCGCCGTCGTTGGTTACGGCAATATCGGACAGTATGCGATTGAGGCGCTGGAAGCTGCCGCTGATTTTGAGATTGCAGGGATTGTGCGCCGCAACCCGTCTGCTGCTGATACAGATTCCGTGTATCCGGTGGTGGCGGATATCCGTGAACTGGGCAAGGTGGATGTGGCACTGCTGTGCTCGCCGACCCGTGCCATCCGTGCGGTTGCTTCAGAGATCCTCGCACTGGGAATTAATACCGTGGACAGTTTTGATGTTCACAGTGAAATTGTCGCGCTGAAAGAGCACCTTGACCCGATTGCCCGCGCCGGTGAGTGTACGGCAATCATCTCCGCAGGCTGGGATCCGGGTTCGGATTCCATTATCCGCACGCTGATGCAGGCAATGGCGCCGAAAGGGCTGACGTACACCAACTTCGGGCCGGGGATGAGCATGGGGCACAGTGTTGCCGCCAAAGCGATTCCCGGTGTGAAGGATGCACTTTCCATGACAATCCCGCTGGGTACCGGTGTTCACCGCCGCATGGTCTATGTTGAGCTGGAGCCGGGGCATGATATTGATACCGTGACCGCCGCGCTGAAAGCCGACAGCTATTTTGCCTCTGATGAGACGCACGTCCGTCAGGTGGACAGCGTGGATGCCCTGAAAGATGTGGGACACGGTGTTTCCATGACGCACAAAGGCGTGTCGGGTAAAACCCATAACCAGTTGTTTGAATACAGCATGCGCATCAATAACCCGGCACTGACCTCCCAGTTTATGGTGTCTGCGGCGCGGGCGACCTGCCGTCAGCAGCCGGGCGCATACAGTGTGATCGAAATCCCGCCGGTAAACTTCCTGGCCGGGGATATCAACAGCTGGATCAGCAAACTGGTGTAGTGATATTTCAGTCACAAAACAGCAATAAAAAAGAGGTGAGAACCTCTTTT