Homologs in group_1292

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07865 FBDBKF_07865 74.4 Morganella morganii S1 lys9 diaminopimelate dehydrogenase
EHELCC_13695 EHELCC_13695 74.4 Morganella morganii S2 lys9 diaminopimelate dehydrogenase
NLDBIP_14140 NLDBIP_14140 74.4 Morganella morganii S4 lys9 diaminopimelate dehydrogenase
LHKJJB_08710 LHKJJB_08710 74.4 Morganella morganii S3 lys9 diaminopimelate dehydrogenase
HKOGLL_08260 HKOGLL_08260 74.4 Morganella morganii S5 lys9 diaminopimelate dehydrogenase
F4V73_RS13155 F4V73_RS13155 73.6 Morganella psychrotolerans - diaminopimelate dehydrogenase

Distribution of the homologs in the orthogroup group_1292

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1292

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q5L9Q6 1.03e-144 411 64 1 297 1 ddh Meso-diaminopimelate D-dehydrogenase Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / LMG 10263 / NCTC 9343 / Onslow / VPI 2553 / EN-2)
G1UII1 1.57e-42 151 35 10 310 1 ddh Meso-diaminopimelate D-dehydrogenase Ureibacillus thermosphaericus
Q9KWR0 6.41e-42 150 34 9 309 1 dapdh Meso-diaminopimelate D-dehydrogenase Lysinibacillus sphaericus
A3DDX7 3.98e-40 145 32 6 313 1 ddh Meso-diaminopimelate D-dehydrogenase Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372)
P04964 1.51e-33 128 32 13 327 1 ddh Meso-diaminopimelate D-dehydrogenase Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
A4XIT8 0.000343 44 29 4 109 3 rex Redox-sensing transcriptional repressor Rex Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS00725
Feature type CDS
Gene -
Product diaminopimelate dehydrogenase
Location 186853 - 187752 (strand: 1)
Length 900 (nucleotides) / 299 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1292
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01408 Oxidoreductase family, NAD-binding Rossmann fold
PF16654 Diaminopimelic acid dehydrogenase C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3804 Function unknown (S) S Uncharacterized conserved protein

Kegg Ortholog Annotation(s)

Protein Sequence

MNTKIKVAIVGYGNIGRFALDAVLAAPDFELVGVVRRDSQNIPEELRNITVTNDIKSLGKVDVALLCSPTRAIKDLAKSILSLGINTVDSFDVHSDIVALKTELDEVAKKHNRVAVISAGWDPGSDSIIRTLMLAMAPKGITYTNFGPGMSMGHSVAAKAIDGVRDALSMTIPLGTGVHRRMVYVELETGANFAQVEQAIKADSYFSSDETHIKQVDSVDSLKDVGHGVQMTHKGVSGKTHNQLFEYAMHINNPALTSQFMVSAARASMKQQAGAYTVIEIPPVDFLAGDLTTLIAKLV

Flanking regions ( +/- flanking 50bp)

TAAACATTATTATCATTCAATAATGATTAACAACGAGAACAGGGAAATAAATGAATACTAAAATAAAAGTCGCTATTGTGGGCTATGGCAATATTGGGCGCTTTGCACTAGATGCAGTACTTGCAGCACCTGATTTTGAGTTAGTGGGGGTGGTTCGCCGTGATAGTCAAAATATTCCAGAAGAACTGCGAAATATAACAGTAACAAATGATATTAAAAGCTTAGGTAAGGTGGATGTTGCTTTATTATGTTCACCAACGAGAGCCATTAAAGATTTGGCTAAATCGATATTGAGCTTAGGTATTAATACCGTTGATAGTTTTGATGTCCACAGTGATATCGTTGCATTAAAAACAGAACTGGATGAGGTGGCGAAAAAGCATAACCGTGTTGCAGTGATTTCAGCGGGTTGGGATCCGGGTTCAGACTCTATTATTCGTACCTTAATGTTAGCTATGGCACCTAAAGGTATTACCTACACTAATTTTGGTCCCGGTATGAGTATGGGGCATAGTGTTGCCGCTAAAGCTATTGATGGTGTAAGAGATGCACTATCAATGACTATTCCATTAGGTACTGGTGTTCATCGGCGTATGGTTTATGTTGAATTAGAAACGGGTGCTAACTTTGCACAGGTTGAGCAAGCCATTAAGGCCGACAGCTATTTCTCATCTGATGAAACACATATTAAACAAGTTGATAGTGTTGATAGCTTAAAAGATGTTGGTCACGGAGTACAAATGACCCATAAAGGGGTGTCAGGCAAAACACACAATCAATTATTTGAATATGCTATGCATATTAATAATCCAGCATTAACATCTCAATTTATGGTTTCTGCAGCCAGAGCAAGTATGAAACAACAAGCGGGTGCCTATACTGTGATTGAAATTCCCCCCGTTGATTTTTTAGCAGGGGATTTAACTACATTAATCGCAAAACTGGTGTAATCAGTTAGGCTTCTTGCAAATAAAATATTGCCCACATGATGTGGGCAATA